8eku_F : 3D-footprint complex

structure name	HUMAN PU.1 ETS-DOMAIN (165-270) BOUND TO D(AATAAATGGAATGGGG) (Transcription factor PU.1)
reference	Terrell et al. 'Cell 42 112671 2023
source	Homo sapiens
experiment	X-ray (resolution=1.52, R-factor=0.159)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
reference complex	8ee9_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8eku_F interface=58,59,62,63,65,66, kirlyqflldllrsgdmkdsiwwvdkdkgtfqfsskhkealahrwgiqkgnrkkmtyQKmaRAlRNygktgevkkvkkkltyqfsgevlgr
interface signature	QKRARN

Estimated binding specificities ?

readout + contact

# IC=3.039 IC/col=0.217 n_of_columns=14

specificity:

A |  24  24  24  24  24  23   4   6   0  49  22  24  24  24
C |  24  24  24  24  24  21   4  78  96  17  22  24  24  24
G |  24  24  24  24  24  21   4   6   0  15  25  24  24  24
T |  24  24  24  24  24  31  84   6   0  15  27  24  24  24

scan!

home
updated Tue Dec 19 03:08:52 2023