8em9_F : 3D-footprint complex

structure name	HUMAN PU.1 ETS-DOMAIN (165-270) BOUND TO D(AATAGGAGAAGTAGGG) (Transcription factor PU.1)
reference	Terrell et al. 'Cell 42 112671 2023
source	Homo sapiens
experiment	X-ray (resolution=2.34, R-factor=0.227)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
reference complex	8ee9_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8em9_F interface=59,62,63,65,66, kirlyqflldllrsgdmkdsiwwvdkdkgtfqfsskhkealahrwgiqkgnrkkmtyqKmaRAlRNygktgevkkvkkkltyqfsgevlg
interface signature	KRARN

Estimated binding specificities ?

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# IC=3.347 IC/col=0.239 n_of_columns=14

specificity:

A |  24  24  24  12  96   5  81  36  23  24  24  24  24  24
C |  24  24  24  12   0   3   4  20  21  24  24  24  24  24
G |  24  24  24  60   0  85   7  20  31  24  24  24  24  24
T |  24  24  24  12   0   3   4  20  21  24  24  24  24  24

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updated Tue Dec 19 03:09:05 2023