8pde_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND HDAC4 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pde_A interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8pde_B interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgf
interface signature	RK/RK

Estimated binding specificities ?

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# IC=5.582 IC/col=0.558 n_of_columns=10

specificity:

A |  12   0  84  24  24  24  24  12  96  96
C |  60   0   0  24  24  24  24  12   0   0
G |  12   0   0  24  24  24  24  12   0   0
T |  12  96  12  24  24  24  24  60   0   0

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updated Mon Dec 16 08:10:02 2024