8pde_DE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND HDAC4 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pde_D interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgf > 8pde_E interface=2,18,22, gRkkiqiqritdernrqVtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg
interface signature	RK/RVK

Estimated binding specificities ?

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# IC=5.339 IC/col=0.534 n_of_columns=10

specificity:

A |  11   0  69  24  24  24  24   9  96   0
C |   9   0   9  24  24  24  24  11   0   0
G |   9   0   9  24  24  24  24   9   0  96
T |  67  96   9  24  24  24  24  67   0   0

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updated Mon Dec 16 08:09:55 2024