8pde_DE : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND HDAC4 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8pde_D interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgf > 8pde_E interface=2,18,22, gRkkiqiqritdernrqVtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg
interface signature	RK/RVK

Estimated binding specificities ?

contact

# IC=5.379 IC/col=0.538 n_of_columns=10

specificity:

A |   0   0  69  24  24  24  24   9  96  69
C |  96   0   9  24  24  24  24  11   0   9
G |   0   0   9  24  24  24  24   9   0   9
T |   0  96   9  24  24  24  24  67   0   9

scan!

home
updated Fri Aug 1 15:00:59 2025