8q9n_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND MITR DEACETYLASE BINDING MOTIF MUTANT L151V.
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
source	Homo sapiens
experiment	X-ray (resolution=1.51, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9n_A interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9n_B interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgfn
interface signature	RK/RK

Estimated binding specificities ?

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# IC=5.767 IC/col=0.577 n_of_columns=10

specificity:

A |  41   0  82  24  24  24  24   0  96   0
C |  13   0   1  24  24  24  24  28   0   0
G |  13   0  13  24  24  24  24   0   0  96
T |  29  96   0  24  24  24  24  68   0   0

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updated Fri Aug 1 15:51:43 2025