8q9p_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND HDAC5 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9p_A interface=2,14,22, gRkkiqiqritdeRnrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9p_B interface=2,22,92, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgF
interface signature	RRK/RKF

Estimated binding specificities ?

readout + contact

# IC=5.427 IC/col=0.543 n_of_columns=10

specificity:

A |  23   0  53  24  24  24  24   0  96   0
C |  10   0  12  24  24  24  24   0   0  10
G |  10   0  10  24  24  24  24   0   0  85
T |  53  96  21  24  24  24  24  96   0   1

scan!

home
updated Thu Jan 8 07:49:10 2026