8q9p_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND HDAC5 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9p_A interface=2,14,22, gRkkiqiqritdeRnrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9p_B interface=2,22,92, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgF
interface signature	RRK/RKF

Estimated binding specificities ?

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# IC=5.446 IC/col=0.545 n_of_columns=10

specificity:

A |  12   0  48  24  24  24  24   0  96   0
C |  12   0  12  24  24  24  24   0   0  12
G |  12   0  12  24  24  24  24   0   0  84
T |  60  96  24  24  24  24  24  96   0   0

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updated Sat Jun 27 17:23:20 2026