8q9q_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA AND HDAC7 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.11, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9q_A interface=2,14,22, gRkkiqiqritdeRnrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgf > 8q9q_B interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkgf
interface signature	RRK/RK

Estimated binding specificities ?

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# IC=3.968 IC/col=0.441 n_of_columns=9

specificity:

A |  11   0  67  24  24  24  24   9  96
C |  67   0  11  24  24  24  24  11   0
G |   9   0   9  24  24  24  24   9   0
T |   9  96   9  24  24  24  24  67   0

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updated Thu Jan 8 07:49:18 2026