8q9r_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MADS-BOX/MEF2D N-TERMINAL DOMAIN BOUND TO DSDNA AND HDAC9 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.25, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9r_A interface=2,14,22, gRkkiqiqritdeRnrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9r_B interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkk
interface signature	RRK/RK

Estimated binding specificities ?

contact

# IC=3.968 IC/col=0.441 n_of_columns=9

specificity:

A |  11   0  67  24  24  24  24   9  96
C |  67   0   9  24  24  24  24   9   0
G |   9   0   9  24  24  24  24  11   0
T |   9  96  11  24  24  24  24  67   0

scan!

home
updated Thu Sep 12 06:45:48 2024