8q9r_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MADS-BOX/MEF2D N-TERMINAL DOMAIN BOUND TO DSDNA AND HDAC9 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9r_A interface=2,14,22, gRkkiqiqritdeRnrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9r_B interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkk
interface signature	RRK/RK

Estimated binding specificities ?

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# IC=4.046 IC/col=0.450 n_of_columns=9

specificity:

A |   0  69  24  24  24  24   9  96  11
C |   0   9  24  24  24  24   9   0   9
G |   0   9  24  24  24  24   9   0  67
T |  96   9  24  24  24  24  69   0   9

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updated Thu Jan 8 07:49:36 2026