8q9r_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MADS-BOX/MEF2D N-TERMINAL DOMAIN BOUND TO DSDNA AND HDAC9 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9r_E interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9r_F interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg
interface signature	RK/RK

Estimated binding specificities ?

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# IC=5.300 IC/col=0.530 n_of_columns=10

specificity:

A |   9   0  96  24  24  24  24   9  96   9
C |   9   0   0  24  24  24  24  11   0   9
G |  11   0   0  24  24  24  24   9   0  67
T |  67  96   0  24  24  24  24  67   0  11

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updated Mon Dec 16 08:58:25 2024