8q9r_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MADS-BOX/MEF2D N-TERMINAL DOMAIN BOUND TO DSDNA AND HDAC9 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.25, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9r_E interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9r_F interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg
interface signature	RK/RK

Estimated binding specificities ?

readout + contact

# IC=5.339 IC/col=0.534 n_of_columns=10

specificity:

A |   9   0  96  24  24  24  24   9  96   9
C |   9   0   0  24  24  24  24   9   0  11
G |   9   0   0  24  24  24  24  11   0  67
T |  69  96   0  24  24  24  24  67   0   9

scan!

home
updated Thu Sep 12 06:45:42 2024