8q9r_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MADS-BOX/MEF2D N-TERMINAL DOMAIN BOUND TO DSDNA AND HDAC9 DEACETYLASE BINDING MOTIF
reference	Chinellato et al. J.Mol.Biol. 436 168541 2024
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	SRF-like;
reference complex	8q9n_B 8q9p_B 8q9q_A 8q9r_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8q9r_E interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg > 8q9r_F interface=2,22, gRkkiqiqritdernrqvtftKrkfglmkkayelsvlcdceialiifnhsnklfqyastdmdkvllkyteynephesrtnadiietlrkkg
interface signature	RK/RK

Estimated binding specificities ?

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# IC=5.937 IC/col=0.594 n_of_columns=10

specificity:

A |   0   0  48  24  24  24  24   0  96  80
C |  80   0  16  24  24  24  24   0   0   0
G |   0   0  16  24  24  24  24   0   0  16
T |  16  96  16  24  24  24  24  96   0   0

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updated Fri Aug 1 15:52:10 2025