Interface of input file ?

interface graph
legend  pdf

footprint
legend

structure nameRNA POLYMERASE II CORE INITIALLY TRANSCRIBING COMPLEX WITH AN ORDERED RNA OF 8 NT
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;
reference complex5iy6_M
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureR/K//RRSRVTR/NVFALFVTNVFPLFVT/K/

Estimated binding specificities ?

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# IC=12.319 IC/col=0.616 n_of_columns=20 specificity:   
A |   0   5  24  24  15  24  24  24  24  24  24  10   0   0  16   0   0  96   0  96
C |  96   5  24  24  50  24  24  24  24  24  24  65  96   0  15   0   0   0   0   0
G |   0  80  24  24  16  24  24  24  24  24  24  15   0   0   5   0   0   0   0   0
T |   0   6  24  24  15  24  24  24  24  24  24   6   0  96  60  96  96   0  96   0
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updated Mon Dec 16 09:38:47 2024