Interface of input file ?

interface graph
legend  pdf

footprint
legend

structure nameRNA POLYMERASE II CORE INITIALLY TRANSCRIBING COMPLEX WITH AN ORDERED RNA OF 10 NT
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;
reference complex5iy6_M 5iy6_N 5iy6_P 5iy6_T
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureR/K//QRRSRVT/NVFALFVTNVFPLFVT/K/

Estimated binding specificities ?

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# IC=12.934 IC/col=0.497 n_of_columns=26 specificity:   
A |  16  24  24   0  96   0  96  96  56  96   0  24  24  24  24  24  24  24  24  24  24  24   0   0  24  72
C |  16  24  24   0   0   0   0   0  16   0   0  24  24  24  24  24  24  24  24  24  24  24   0   0  24   8
G |  48  24  24   0   0   0   0   0   8   0  96  24  24  24  24  24  24  24  24  24  24  24  96  96  24   8
T |  16  24  24  96   0  96   0   0  16   0   0  24  24  24  24  24  24  24  24  24  24  24   0   0  24   8
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updated Thu Jan 8 08:45:09 2026