Interface of input file ?

interface graph
legend  pdf

footprint
legend

structure nameRNA POLYMERASE II CORE INITIALLY TRANSCRIBING COMPLEX WITH AN ORDERED RNA OF 12 NT
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;
reference complex5iy6_M 5iy6_N 5iy6_P 5iy6_T
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRH///NRRT/NVFALFVTNVFPLFVT/K/

Estimated binding specificities ?

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# IC=12.405 IC/col=0.539 n_of_columns=23 specificity:   
A |  62  24  24   0  24  24  24  24  24  24  24  24  24   5  11   0   0   5   0   0  79   0  96
C |  11  24  24  96  24  24  24  24  24  24  24  24  24  84  67  96   0   7   0   0   7   0   0
G |  12  24  24   0  24  24  24  24  24  24  24  24  24   2   5   0   0   5   0   0   5   0   0
T |  11  24  24   0  24  24  24  24  24  24  24  24  24   5  13   0  96  79  96  96   5  96   0
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updated Thu Jan 8 09:05:44 2026