Interface of input file ?

interface graph
legend  pdf

footprint
legend

structure nameRNA POLYMERASE II CORE INITIALLY TRANSCRIBING COMPLEX WITH AN ORDERED RNA OF 12 NT
experimentNMR
structural superfamilyCyclin-like;Zinc beta-ribbon;Transcription factor IIA TFIIA, beta-barrel domain;Transcription factor IIA TFIIA, alpha-helical domain;TATA-box binding protein-like;Rap30/74 interaction domains;"Winged helix" DNA-binding domain;
reference complex5iy6_M 5iy6_N 5iy6_P 5iy6_T
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQPTARH/YSAI//RT/NVFALFVTNVFPLFVT/K/

Estimated binding specificities ?

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# IC=12.511 IC/col=0.544 n_of_columns=23 specificity:   
A |   0  96   5  96  96  79  96   0  24   0  24  24  24  24  24  24  24  24  11   0  24  24  11
C |   0   0   5   0   0   7   0   0  24   7  24  24  24  24  24  24  24  24  67   0  24  24  11
G |   0   0   5   0   0   5   0  96  24  84  24  24  24  24  24  24  24  24   5  96  24  24  11
T |  96   0  81   0   0   5   0   0  24   5  24  24  24  24  24  24  24  24  13   0  24  24  63
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updated Fri Aug 1 17:00:08 2025