8ssr_A : 3D-footprint complex

structure name	ZNFS 3-11 OF CCCTC-BINDING FACTOR (CTCF) COMPLEXED WITH 35MER DNA 35- 20 (Transcriptional repressor CTCF)
reference	Horton et al. 'Nucleic 51 8447 2023
source	Homo sapiens
experiment	X-ray (resolution=3.14, R-factor=0.251)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	8ssq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ssr_A interface=18,21,25,44,47,50,74,75,78,100,103,130,132,133,136,188,190,191,194,216,218,219,248, trphkcpdcdmafvtsgElvRhrrYkhthekpfkcsmcdyasvEvsKlkRhirshtgerpfqcslcsyasrdtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrQeRHmiMhkrthtgekpyacshcdktfrQkQLldmhfkryhdpnfvpaafvcskcgktftRrntmarhadnca
interface signature	ERYEKRYKRQTRSDVQRHMQQLR

Estimated binding specificities ?

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# IC=24.028 IC/col=0.801 n_of_columns=30

specificity:

A |   0   0   0   0  96   0   0   0   0   3   8   0  10  24  24  24  24  24  24  24  24   0   0   8  96  63   6   2   0  87
C |  96   0  96  96   0  96  96   0   0  89   2   0   8  24  24  24  24  24  24  24  24   0   0  15   0  23  10   0  96   0
G |   0  96   0   0   0   0   0   0  96   2   2  96  61  24  24  24  24  24  24  24  24  74  96  10   0   8   6  94   0   5
T |   0   0   0   0   0   0   0  96   0   2  84   0  17  24  24  24  24  24  24  24  24  22   0  63   0   2  74   0   0   4

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updated Fri Sep 13 13:33:36 2024