8v6g_A : 3D-footprint complex

structure name	DNA INITIATION COMPLEX (CONFIGURATION 1) OF XENOPUS LAEVIS DNA POLYMERASE ALPHA-PRIMASE
experiment	NMR
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;Zinc finger domain of DNA polymerase-alpha;
sequence family	DNA polymerase family B; DNA Polymerase alpha zinc finger; DNA polymerase family B, exonuclease do;
multimeric complexes	8g9l_AB 8g9o_AB 8ucv_AB 8v6g_AC 8v6h_AC 8v6i_ACD 8v6j_AC
reference complex	8g9l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8v6g_A interface=338,446,573,577,579,584,586,675,703, qvfrfywldayedqysqpgvvylfgkvwiesadayvsccvsvkniertvyllprenrvqlstgkdtgapvsmmhvyqefneavaekykimkfkskkvdkdyafeipdvpasseylevrysadspqlpqdlkgetfshvfgtntsslelfllsrkikgpswleikspqlssqpmswckveavvtrpdqvsvvkdlapppvvvlslsmktvqnakthqneivaiaalvhhtfpldkappqppfqthfcvlsklndcifpydyneavkqknanieialtertllgfflakihkidpdvivghdiygfdlevllqrinsckvpfwskigrlrrsvmpklggRsgfaernaacgriicdieisakelircksyhlselvhqilkaervvippenirnayndsvhllymlentwidakfilqimcelnvlplalqitniagnvmsrtlmggRserneylllhaftennfivpdkpvaayagglvlepkvgfydkfillldfnslypsiiqeynicfttvhreadeipelphsdlemgilpreirklverrrhvkqlmkqpdlnpdlylqydirqkalkLtanSmYgclgFsYsrfyakplaalvthqgreillhtkemvqkmnleviygdtdsimintncnnleevfklgnrvkseinksyklleididgifksllllkkKkyaaltveptgdgkyvtkqelkgldivRrdwcelakqagnyvisqilsdqprdsiveniqkklteigenvtngtvpitqyeinkaltkdpqdypdkkslphvhvalwinsqggrkvkagdtisyvicqdgsnlsasqrayaqeqlqkqenlsidtqyylsqqvhpvvaricepidgidsaliamwlgldpsqfrdcerfkffcpkcgteniydnvfdgsglqiepglkrcskpecdaspldyviqvhnkllldirryikkyysgwlvceektcqnrtrrlplsfsrngpicqacskatlrseypekalytqlcfyrfifdwdyalekvvseqerghlkkklfqesenqykklkstvdqvlsrsgysevnlsklfq
interface signature	RRLSYFYKR

Estimated binding specificities ?

contact

# IC=5.766 IC/col=0.824 n_of_columns=7

specificity:

A |  13   0  96   0  16  24  96
C |  13  96   0  96  13  24   0
G |  16   0   0   0  54  24   0
T |  54   0   0   0  13  24   0

scan!

home
updated Tue Dec 17 20:35:28 2024