1aoi_ABCDEFGH
citing 3d-footprint
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structure name
COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT
reference
Richmond et al. Nature 389 251 1997
source
XENOPUS LAEVIS
experiment
X-ray (resolution=2.80, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
1aoi_D
5o9g_E
5o9g_F
5o9g_G
5z3u_A
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6upk_H
6x0n_f
6yov_C
7at8_D
7eg6_A
7egp_S
7jzv_N
7nkx_a
7nkx_f
7otq_E
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 1aoi_A interface=3,4,28,46, phRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 1aoi_B interface=26, kvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1aoi_C interface=39,74, gkqggktrakaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 1aoi_D interface=4,5, kkrRKtrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 1aoi_E interface=21,22,46,64, latkaarksapatggvkkphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 1aoi_F interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1aoi_G interface=31, akaktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 1aoi_H interface=5, kkrrKtrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak
3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
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updated Mon Sep 9 11:50:58 2024