Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4kgc_ABCDEFGH 4ld9_ABCDEFGH 5e5a_ABCDEFGH 5o9g_ABCDEFGHW 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 6ftx_ABCDEFGHW 6g0l_ABCDEFGHMW 6j99_ABCDEFGH 6ne3_ABCDEFGHW 6o96_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6zhx_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7otq_ABCDEFGHK 7unc_ABabcdefgh 7und_ABEZabdefgh 7vdt_ABCDEFGHK 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 8du4_ABCDEFGH 8etv_ABCDEF 8eue_ABCDEFHK 8g6g_ABCDEFGH 8g6h_ABCDEFGH 8t9h_ABCDEFGH
redundant complexes5oxv_G 5oy7_C 6ryr_G 6zhx_C 7xfi_C 7xfm_C 8b0a_C 8eue_C 4kgc 4ld9 5e5a 5x0x 6ftx 6g0l 6j99 6ne3 6o96 6om3 6ryu 7nkx 7nky 7otq 7unc 7und 7vdt 7x3t 7x3v 7x3w 7x3x 7xfc 7xfh 7xfj 7xfl 7xfn 7xnp 8bvw 8byq 8bz1 8du4 8etv 8g6g 8g6h 8of4 8svf 8t9h 8tof
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--             +-----------------------------8txv_G    
                   +-1 
  --RT--         +-2 +-----------------------------8u14_G    
                 ! ! 
  LC----       +-3 +-----------------------------8bvw_e    
               ! ! 
  --RT--     --4 +-----------------------------8smw_G    
               ! 
  --RGRG       +-----------------------------8kcb_A

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updated Fri Sep 13 20:15:33 2024