Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF NUCLEOSOME-CHD1 COMPLEX
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1aoi_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1s32_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 1zla_ABCDEFGH 2cv5_ABCDEFGH 2fj7_ABCDEFGH 2nzd_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3an2_ABCDEFGH 3av1_ABCDEFGH 3av2_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azk_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kuy_ABCDEFGH 3kwq_ABCDEFGH 3kxb_ABCDEFGH 3lja_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3mvd_ABCDEFGHKL 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 3w96_ABCDEFGH 3w97_ABCDEFGH 3w98_ABCDEFGH 3w99_ABCDEFGH 3wkj_ABCDEFGH 3wtp_ABCDEFGH 3x1s_ABCDEFGH 3x1v_ABCDEFGH 4kgc_ABCDEFGH 4ld9_ABCDEFGH 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xzq_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 4ys3_ABCDEFGH 4z5t_ABCDEFGH 4z66_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5ay8_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5b32_ABCDEFGH 5b40_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5e5a_ABCDEFGH 5f99_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gt3_ABCDEFGH 5gtc_ABCDEFGH 5gxq_ABCDEFGH 5hq2_ABGH 5jrg_ABCDEFGH 5kgf_ABCDEFGH 5mlu_ABCDEFGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5o9g_ABCDEFGHW 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5x0y_ABCDEFGHO 5x7x_ABCDEFGH 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 5xm0_ABCDEFGH 5xm1_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 5zbx_ABCDEFGH 6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6e0c_ABCDEFGH 6e0p_ABCDEFGH 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6esi_ABCDEFGH 6fq5_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH 6ftx_ABCDEFGHW 6g0l_ABCDEFGHMW 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6inq_ABEbcdef 6inq_gh 6ipu_ABCDEFGH 6iq4_ABCDEFGH 6ir9_ABEWabcdef 6iro_ABCDEFGHL 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 6j99_ABCDEFGH 6jm9_ABCDEFGH 6jma_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6jxd_ABCDEFGH 6jyl_ABCDEFGHK 6k1p_ABCDEFGHK 6ke9_ABCDEFGH 6kvd_ABCDEFGH 6kxv_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6l9h_ABCDEFGH 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6le9_ABCDEFGH 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6muo_ABCDEFGHM 6mup_ABCDEFGHMN 6ne3_ABCDEFGHW 6nj9_ABCDEFGH 6nn6_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH 6o1d_ABCDEFGH 6o96_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6pa7_ABCDEFGHKP 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6r0c_ABCDEFGH 6r1t_ABCDEFGH 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6t90_ABCDEFGHKL 6t93_ABCDEFGH 6tem_ABCDEFGH 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6y5d_ABCDEFGH 6y5d_KMNOPQRST 6yov_ABCDEFGHKL 6z6p_ABCDEFGHM 6z6p_KN 6zhx_ABCDEFGH 7a08_bcdefghi 7at8_ADEFGHIJK 7bwd_ABCDEFGHLM 7bxt_ABCDEFGHMN 7by0_ABCDEFGH 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7ccq_ABCDEFGH 7ccr_ABCDEFGH 7ccr_KV 7ccr_LMNOPQRS 7cow_ABCDEFGHKLMNOPQRST 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7d1z_ABCDEFGH 7d20_ABCDEFGH 7dbh_ABCDEFGH 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7e8i_ABCDEFGH 7ea5_ABCDEFGH 7ea8_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7jo9_ABCDEFGH 7joa_ABCDEFGH 7jzv_NOPQnopq 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7k6p_ABCDEFGH 7k6q_ABCDEFGHK 7ktq_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7nl0_ABCDEFGH 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7otq_ABCDEFGHK 7pii_ABCDEFGH 7r5r_ABCDEFGH 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7swy_ABCDEFGH 7tan_ABCDEFGH 7tn2_ABCDEFGHW 7u0j_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7unc_ABabcdefgh 7und_ABEZabdefgh 7v90_ABCDEFGH 7v96_ABCDEFGHKLMNOPQR 7v9c_ABCDEFGHKLMNOPQR 7v9j_ABCDEFGHKLMNOPQRSTUVWXYZ 7v9k_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7v9s_ABCDEFGHKLMNOPQRSTUVWXYZ 7va4_ABCDEFGHKLMNOPQRSTUVWXYZabcdefgh 7vbm_ABCDEFGH 7vdt_ABCDEFGHK 7vz4_ABCDEFGH 7w9v_ABCDEFGH 7wbw_Mg 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7xcr_ABCDEFGH 7xct_ABCDEFGHL 7xd0_ABCDEFGHKL 7xd1_ABCDEFGH 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 7xpx_ABCDEFGH 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xvl_ABCDEFGH 7xvl_KLMNOPQR 7xvl_UVWXYZab 7xvl_efghijkl 7xvm_ABCDEFGH 7xx5_ABCDEFGH 7xx5_KLMNOPQR 7xx6_AXY 7xx6_BCDEFGHo 7xx6_KLMNOPQR 7xx6_UVWZabp 7xx6_efghijkl 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y7i_ABCDEFGH 7yqk_ABCDEFGH 7ywx_ABCDEFGLNVW 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8dk5_ABCDEFGH 8du4_ABCDEFGH 8etv_ABCDEF 8eue_ABCDEFHK 8evg_ABCDEFGH 8g57_ABCDEFGH 8g6g_ABCDEFGH 8g6h_ABCDEFGH 8g86_ABCDEFGH 8grq_ABCDEFGH 8guk_ABCDEFGH 8hak_ABCDEFGH 8he5_Eh 8hr1_ABCDEFGH 8ieg_CDEFGHKL 8jbx_ABCDEFGH 8jcc_ABCDEFGH 8jcd_ABCDEFGH 8jh2_gh 8jl9_ABCDEFGH 8jla_ABCDEFGH 8jlb_ABCDEFGH 8jld_ABCDEFGH 8jnd_LNPQ 8jne_ABCDEFGH 8jne_KN 8jne_MQS 8kb5_ABCDEFGH 8ox0_ABCDEFGH 8pkj_ABCDEFGH 8siy_CDEFGHIJ 8syp_ABCDEFGH 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9h_ABCDEFGH 8vfx_ABCDEFGH 8wg5_ABCDEFGH 8x7k_ABCDEFGH 8ybj_ABCDEFGH 8ybk_ABCDEFGH 8yti_ABCDEFGH 8yti_KLMNOPQR 8yti_UV 9fgq_ABCDEFGH 9fh9_ABCDEFGH
redundant complexes1m19_G 1p34_G 1p3a_G 1p3g_C 1p3i_G 1p3k_G 1p3m_G 1zbb_G 1zla_C 2cv5_C 3afa_C 3azh_C 3azn_C 3c1c_G 3mgp_G 3reh_C 3rej_G 3rek_C 3uta_C 3utb_G 3x1v_G 4wu8_C 4ym5_G 4z66_C 5avc_G 5b0y_G 5b0z_G 5b2i_C 5b32_D 5cpk_C 5f99_C 5gt3_C 5kgf_G 5omx_G 5ong_G 5oxv_G 5oy7_C 6esf_G 6esg_G 6hkt_w 6iq4_G 6j51_g 6jma_G 6ke9_G 6l9z_C 6la2_g 6lab_M 6pwx_M 6r8z_G 6r91_C 6r92_C 6r93_G 6ryr_G 6sef_C 6wz5_G 6x5a_G 6zhx_C 7by0_C 7cow_C 7crp_C 7d20_G 7enn_C 7oha_G 7ohb_G 7r5r_G 7u46_G 7u52_G 7v96_Q 7v9j_C 7v9k_G 7vz4_G 7wbv_g 7xd1_G 7xfi_C 7xfm_C 7xpx_G 7xvm_C 7xzy_C 7y00_G 8b0a_C 8eue_C 8f86_G 8g8b_C 8g8g_C 8gui_G 8guk_G 8hah_C 8hxz_C 8ihm_G 8jcd_C 8jnd_Q 8jnf_P 8ott_D 8ox1_C 8pkj_C 8sps_G 8v7l_C 1aoi 1m18 1m1a 1p3b 1p3f 1p3l 1p3o 1p3p 1s32 2fj7 2nzd 3a6n 3an2 3av1 3av2 3ayw 3aze 3azf 3azg 3azi 3azj 3azk 3azl 3azm 3c1b 3kuy 3kwq 3kxb 3lja 3lz0 3lz1 3mgq 3mgr 3mgs 3mnn 3mvd 3rei 3rel 3tu4 3ut9 3w96 3w97 3w98 3w99 3wkj 3wtp 3x1s 4kgc 4ld9 4r8p 4wu9 4xzq 4ym6 4ys3 4z5t 5av5 5av6 5av8 5av9 5avb 5ay8 5b1l 5b1m 5b24 5b2j 5b31 5b40 5cpi 5cpj 5e5a 5gse 5gtc 5gxq 5hq2 5jrg 5mlu 5nl0 5onw 5x0x 5x0y 5x7x 5xf3 5xf4 5xf5 5xm0 5xm1 5y0c 5y0d 5z3l 5z3o 5z3u 5z3v 5zbx 6a5l 6a5o 6a5p 6a5r 6a5t 6a5u 6buz 6c0w 6e0c 6e0p 6esh 6esi 6fq5 6fq6 6fq8 6ftx 6g0l 6inq 6ipu 6ir9 6iro 6j4w 6j4x 6j4y 6j4z 6j50 6j99 6jm9 6jr0 6jr1 6jxd 6jyl 6k1p 6kvd 6kxv 6l49 6l4a 6l9h 6la8 6la9 6le9 6ler 6m3v 6m44 6muo 6mup 6ne3 6nj9 6nn6 6nog 6nqa 6o1d 6o96 6om3 6pa7 6pww 6r0c 6r1t 6r1u 6r25 6r8y 6r90 6r94 6ryu 6s01 6se0 6se6 6see 6seg 6t90 6t93 6tem 6upk 6upl 6usj 6v2k 6vyp 6wz9 6x0n 6x59 6xjd 6y5d 6yov 6z6p 7a08 7at8 7bwd 7bxt 7c0m 7ccq 7ccr 7cro 7crq 7crr 7d1z 7dbh 7dbp 7e8d 7e8i 7ea5 7ea8 7eg6 7egp 7jo9 7joa 7jzv 7k5x 7k5y 7k60 7k61 7k63 7k6p 7k6q 7ktq 7nkx 7nky 7nl0 7oh9 7ohc 7otq 7pii 7scy 7scz 7swy 7tan 7tn2 7u0g 7u0i 7u0j 7u47 7u4d 7u50 7u51 7u53 7unc 7und 7uv9 7v90 7v9c 7v9s 7va4 7vbm 7vdt 7w9v 7wbw 7wbx 7x3t 7x3v 7x3w 7x3x 7xcr 7xct 7xd0 7xfc 7xfh 7xfj 7xfl 7xfn 7xnp 7xse 7xsx 7xsz 7xt7 7xtd 7xvl 7xx5 7xx6 7xzx 7xzz 7y7i 7yi1 7yqk 7ywx 7zs9 7zsa 7zsb 8aag 8atf 8bvw 8byq 8bz1 8cbn 8cbq 8ceo 8cww 8cze 8dk5 8du4 8etv 8evg 8evh 8evi 8evj 8g57 8g6g 8g6h 8g86 8g88 8gpn 8grq 8guj 8h0v 8h0w 8hag 8hai 8haj 8hak 8hal 8ham 8han 8he5 8hr1 8ieg 8jbx 8jcc 8jh2 8jh3 8jh4 8jl9 8jla 8jlb 8jld 8jne 8kb5 8of4 8osj 8osk 8osl 8ots 8ox0 8pc5 8pc6 8peo 8pep 8pki 8rbx 8siy 8spu 8svf 8syp 8t3t 8t3w 8t3y 8t9h 8tof 8v4y 8v6v 8vfx 8vfy 8vfz 8vg0 8vg1 8vg2 8wg5 8x7k 8xbt 8xbu 8ybj 8ybk 8yti 8yv8 9fgq 9fh9
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--             +-----------------------------8txv_G    
                   +-1 
  --RT--         +-2 +-----------------------------8u14_G    
                 ! ! 
  LC----       +-3 +-----------------------------8bvw_e    
               ! ! 
  --RT--     --4 +-----------------------------8smw_G    
               ! 
  --RGRG       +-----------------------------8kcb_A

home
updated Fri Sep 13 20:15:33 2024