interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCLASS 3 : TRANSLOCATED NUCLEOSOME
(HISTONE H2B)
sourceXENOPUS LAEVIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6fq5_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH
redundant complexes6fq5_D 6fq6
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------RA                                         +6t7a_C    
                     +-----------------------------1 
  ------RT         +-5                             +7lyb_G    
                   ! ! 
  ------RT       +-6 +-----------------------------7lya_E    
                 ! ! 
  ------RT       ! +-----------------------------7zs9_e    
                 ! 
  ------RA     --7                            +7k78_E    
                 !          +-----------------2 
  ------RT       !      +---3                 +7wlr_E    
                 !      !   ! 
  RAETRT--       +------4   +------------------4ne1_p    
                        ! 
  ------RT              +----------------------1u35_G    
               

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updated Fri Sep 13 21:42:31 2024