interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCLASS 3 : TRANSLOCATED NUCLEOSOME
(HISTONE H2B)
sourceXENOPUS LAEVIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes6fq5_ABCDEFGH 6fq6_ABCDEFGH 6fq8_ABCDEFGH
redundant complexes6fq5_D 6fq6
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --RA--         +-----------------------------6g0l_D    
               +-8 
  RG----       ! +-----------------------------5x0y_G    
               ! 
  RG----       !                             +8txv_G    
               !              +--------------1 
  RG----     --9     +--------4              +8ox0_C    
               !     !        ! 
  RG----       !     !        +--------------8jla_C    
               !     ! 
  RT----       !     !                        +8u14_G    
               +-----7                      +-2 
  RA----             !     +----------------3 +1zla_C    
                     !     !                ! 
  RA--RA             !  +--5                +6a5l_g    
                     !  !  ! 
  RT----             +--6  +-----------------8hr1_E    
                        ! 
  RT----                +--------------------8grq_A    
             

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updated Wed Dec 18 03:42:24 2024