1dp7_P : 3D-footprint complex

structure name	COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE
reference	Gajiwala et al.
experiment	X-ray (resolution=1.50, R-factor=0.192)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	RFX DNAbinding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1dp7_P interface=41,45,58,62,67, tvqwlldnyetaegvslprstlynhyllhsqeqklepvnaAsfgKlirsvfmglrtrRlgtRgnskYhyyglrika
interface signature	AKRRY

Estimated binding specificities ?

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# IC=3.361 IC/col=0.373 n_of_columns=9

specificity:

A |  38   9  21  24   0   0  24  24  52
C |  19  67  33  24   0   0  24  24  14
G |  19  11  21  24  96  96  24  24  14
T |  20   9  21  24   0   0  24  24  16

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----AC------KC--------RGRAYG   L                 +---------1dp7_P    
                                         +---------1 
  --QTNAST--RGHTNT--STLA------   L   +---2         +---------2hdc_A    
                                     !   ! 
  ------NAST--RGHTNT----------   L --4   +-------------------7fj2_B    
                                     ! 
  NT--------------------------       ! +----------------------7tve_F    
                                     +-3 
  ------NAST--RGHT----ST------   L     +----------------------3g73_A

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updated Fri Sep 13 15:31:40 2024