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structure nameSTRUCTURE OF THE FOXM1 DNA BINDING
(Forkhead box protein M1)
referenceLittler et al. 'Nucleic ? ? 2010
sourceHomo sapiens
experimentX-ray (resolution=2.21, R-factor=0.206)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes3g73_AB 7fj2_AB 7fj2_EF
redundant complexes7fj2_F
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNSRHS

Estimated binding specificities ?

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# IC=5.121 IC/col=0.853 n_of_columns=6 specificity:   
A |   7  14   7   0   0  96
C |   7   7   9   0   7   0
G |  14  61   7   0   0   0
T |  68  14  73  96  89   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: FOXM1
TAAACAPubMed3g73_A(5.71e-11), 3g73_AB(2.21e-07)

Dendrogram of similar interfaces ?

matrix format
  
  --------------NAST--RGHT--STLT--------   L                              +7cby_C    
                                                                     +----1 
  --------------NAST--RGHT--STFT--------   L          +--------------3    +1vtn_C    
                                                      !              ! 
  --------------NAST--RTHT--STLT--------   L          !              +-----4lg0_A    
                                                   +--7 
  --TT------KATTQTTG----LTRT----KA--FTYT   L       !  !  +-----------------2p7c_B    
                                                   !  +--5 
  ----------STRTSTHG----------------RA--   L       !     !                +3zpl_B    
                                               +---8     +----------------2 
  ----------------RC----YG--------KT----       !   !                      +2acj_B    
                                               !   ! 
  --------------NAST--RTHT--ST----------   L   !   !             +---------3l2c_A    
                                             --9   !  +----------4 
  --------------RGNT--RGSTAT--RA--------   L   !   +--6          +---------2o6g_G    
                                               !      ! 
  RT--LANTHGTTETYTRG--------------------   L   !      +--------------------1f4k_B    
                                               ! 
  ------------KT--RGAT--RGNT------------   L   +---------------------------8smh_F    
                                             

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updated Sat Jan 10 05:51:44 2026