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structure nameSTRUCTURE OF THE FOXM1 DNA BINDING
(Forkhead box protein M1)
referenceLittler et al. 'Nucleic ? ? 2010
sourceHomo sapiens
experimentX-ray (resolution=2.21, R-factor=0.206)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes3g73_AB 7fj2_AB 7fj2_EF
redundant complexes7fj2_F
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNSRHS

Estimated binding specificities ?

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# IC=5.372 IC/col=0.895 n_of_columns=6 specificity:   
A |   8  17   8   0   0  96
C |  10   8   8   0   0   0
G |  17  54   0   0   0   0
T |  61  17  80  96  96   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: FOXM1
TAAACAPubMed3g73_A(5.71e-11), 3g73_AB(2.21e-07)

Dendrogram of similar interfaces ?

matrix format
  
  --------------NAST--RGHT--STLT--------   L                                +-7cby_C    
                                                                       +----1 
  --------------NAST--RGHT--STFT--------   L            +--------------3    +-1vtn_C    
                                                        !              ! 
  --------------NAST--RTHT--STLT--------   L            !              +------4lg0_A    
                                                     +--7 
  --TT------KATTQTTG----LTRT----KA--FTYT   L         !  !  +-----------------2p7c_B    
                                                     !  +--5 
  ----------STRTSTHG----------------RA--   L         !     !                +3zpl_B    
                                                 +---8     +----------------2 
  ----------------RC----YG--------KT----         !   !                      +2acj_B    
                                                 !   ! 
  --------------NAST--RTHT--ST----------   L     !   !             +----------3l2c_A    
                                               +-9   !  +----------4 
  --------------RGNT--RGSTAT--RA--------   L   ! !   +--6          +----------2o6g_G    
                                               ! !      ! 
  RT--LANTHGTTETYTRG--------------------   L -10 !      +---------------------1f4k_B    
                                               ! ! 
  ----------------------------------KG--   L   ! +----------------------------5xfq_A    
                                               !  
  ------------KT--RGAT--RGNT------------   L   +----------------------------8smh_F    
                                             

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updated Mon Jun 29 16:03:37 2026