| structure name | STRUCTURE OF TRANSCRIPTION FACTOR GENESIS/DNA COMPLEX (PROTEIN TRANSCRIPTION FACTOR) |
| source | RATTUS NORVEGICUS |
| experiment | NMR |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Fork head domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | QNSRHNSRR |
Estimated binding specificities ?
readout + contact |  |
A | 19 63 63 34 96 0 92 96 4 70 C | 19 10 13 20 0 0 2 0 88 8 G | 20 13 10 20 0 0 1 0 2 8 T | 38 10 10 22 0 96 1 0 2 10scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: GENESIS | ||
| TATAAAAG | PubMed | 2hdc_A(1.13e-02) |
Dendrogram of similar interfaces ?
matrix format------------------------RGHT--ST-------------------- L +6akp_C +--2 ----------------NAST--RGHT--STLT-------------------- L ! +7cby_C +--3 ----------------NA----RA--HT--STLT------------------ L ! ! +2a07_J +----5 +--1 ------------------NAST--RG-------------------------- L ! ! +6nce_A ! ! ----LT--NTHG--RT--YTPT------------------------------ L +------7 +------6qil_A ! ! ------ST----------NAST--RTHT--STLT------------------ L ! ! +------4lg0_A +-10 +----4 PG-------------------------------------------------- ! ! +------6la8_S ! ! ----YC------HGQT--YTPT--------------LG-------------- L +-11 +------------------5x11_A ! ! --RTLT--NTHGTA----YTRG------------------------------ L ! ! +-------------2efw_A +-12 +------9 ----------PTPG--TTRG------------------HT------------ L ! ! +-------------5xxp_A ! ! ------ST----------NAST--RTHT--ST-------------------- L ! ! +--------3l2c_A +-13 +--------------6 --------------------------YG------------------------ ! ! +--------4lb5_B ! ! ----------NT--TCTA---------------------------------- L +-14 ! +------------5zux_A ! ! +------------8 --------------------RC----YG------KT---------------- ! ! +------------2acj_B +-15 ! ----------------------------------------RGVGTGITPTRC L ! ! +---------------------------5v9x_A -16 ! --------------SGAA---------------------------------- L ! +---------------------------6waa_D ! --------RC------------------------------------------ L +-----------------------------7cc9_A |
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updated Fri Sep 13 16:20:44 2024