3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Wed Jun 24 09:29:44 2026

structure name	CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS
reference	White et al. 'EMBO 20 5207 2001
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Histone-fold;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	7e9c_A 7e9c_D 7e9c_F 7e9c_G 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1id3_A interface=3,28,46, phRykpgtvalreirrfqkstellirkLpfqrlvreiaqdfktdlRfqssaigalqesveaylvslfedtnlaaihakrvtiqkkeiklarrlrger > 1id3_B interface=22, dniqgitkpairrlarrggvkRisgliyeevravlksflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg > 1id3_C interface=28, qsrsakagltfpvgrvhrllrrgnyaqRigsgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpkksakat > 1id3_D interface=1, Rketyssyiykvlkqthpdtgisqksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavsegtravtkyssst > 1id3_E interface=3,4,46, phRYkpgtvalreirrfqkstellirklpfqrlvreiaqdfktdlRfqssaigalqesveaylvslfedtnlaaihakrvtiqkkeiklarrlrger > 1id3_F interface=15, hrkilrdniqgitkPairrlarrggvkrisgliyeevravlksflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg > 1id3_G interface= kasqsrsakagltfPvgrvhrllrrgnyaqrigsgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpkk > 1id3_H interface= vrketyssyiykvlKqthpdtgisqksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavsegtravtkyssstqa