3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1id3_ABCDEFGH 4jjn_ABCDEFGH 4kud_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7k78_ABCDEFGH 7k7g_ABCDEFGHM 7on1_abcdefgh
redundant complexes4kud_D 7e9f_D 1id3 4jjn 7k78 7k7g 7on1 7ssa 8xgc
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  RG--------         +-----------------------------7ccr_H    
                   +-8 
  ------RA--       ! +-----------------------------7e9c_F    
                   ! 
  ------RT--       !                              +8u14_G    
                   !                      +-------2 
  ------RG--       !                      !       +8upf_G    
                   !           +----------4 
  ------RARA     --9           !          !       +6a5l_g    
                   !           !          +-------1 
  ------RC--       !   +-------5                  +7yqk_C    
                   !   !       ! 
  ------RG--       !   !       !                 +8txv_G    
                   ! +-6       +-----------------3 
  --HGRTRG--       ! ! !                         +8rbx_V    
                   +-7 ! 
  ------RC--         ! +--------------------------7ux9_E    
                     ! 
  ------RT--         +---------------------------6px1_A

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updated Sat Jan 10 14:56:46 2026