3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1id3_ABCDEFGH 4jjn_ABCDEFGH 4kud_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7k78_ABCDEFGH 7k7g_ABCDEFGHM 7on1_abcdefgh
redundant complexes4kud_D 7e9f_D 1id3 4jjn 7k78 7k7g 7on1 7ssa 8xgc
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                       +-----9fgq_D    
                   !                +------4 
  ----RA----       !                !      !    +1zla_C    
                   !             +--5      +----3 
  ----RA--RA       !             !  !           +6a5l_g    
                   !             !  ! 
  ----RG----     -10         +---6  +------------8jla_C    
                   !         !   ! 
  ----RT----       !         !   !               +8u14_G    
                   !       +-7   +---------------1 
  ----RG----       !       ! !                   +8ox0_C    
                   !    +--8 ! 
  --LCRT----       !    !  ! +-------------------8hr1_E    
                   !    !  ! 
  ----RT----       +----9  +---------------------8grq_A    
                        ! 
  ----RG----            !                        +8txv_G    
                        +------------------------2 
  ----RG----                                     +5x0y_G

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updated Wed Dec 18 08:42:11 2024