3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1id3_ABCDEFGH 4jjn_ABCDEFGH 4kud_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7k78_ABCDEFGH 7k7g_ABCDEFGHM 7on1_abcdefgh
redundant complexes4kud_D 7e9f_D 1id3 4jjn 7k78 7k7g 7on1 7ssa 8xgc
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                         +----9fgq_D    
                   !                +--------4 
  ----RG----       !                !        +----5x0y_G    
                   !                ! 
  ----RT----       !          +-----6               +8u14_G    
                   !          !     !             +-1 
  ----RA----     -10          !     !  +----------3 +1zla_C    
                   !          !     !  !          ! 
  ----RG----       !        +-7     +--5          +8ox0_C    
                   !        ! !        ! 
  ----RG----       !        ! !        +----------8jla_C    
                   !      +-8 ! 
  --LCRT----       !      ! ! +-------------------8hr1_E    
                   !      ! ! 
  ----RT----       +------9 +---------------------8grq_A    
                          ! 
  ----RA--RA              !                      +6a5l_g    
                          +----------------------2 
  ----RG----                                     +8txv_G

home
updated Sun Aug 3 16:07:09 2025