3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1id3_ABCDEFGH 4jjn_ABCDEFGH 4kud_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7k78_ABCDEFGH 7k7g_ABCDEFGHM 7on1_abcdefgh
redundant complexes4kud_D 7e9f_D 1id3 4jjn 7k78 7k7g 7on1 7ssa 8xgc
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  RG------------------                                   +7k5x_H    
                                                 +-------2 
  RG------------------                           !       +7k60_H    
                                             +---9 
  ----------------RT--                       !   !       +7m1x_C    
                                             !   +-------4 
  ----------------RT--                    +-10           +7lyb_G    
                                          !  !  
  ----------------RT--                    !  !          +6m4d_C    
                                       +-11  +----------5 
  ----------------RA--                 !  !             +6t7a_C    
                                       !  !  
  --------RAAANA------              +-12  +-------------1jfi_B    
                                    !  !  
  RG------------------              !  !               +6y5d_H    
                                    !  +---------------1 
  RT------------------              !                  +7v9c_H    
                                +--13  
  ----------------RA--          !   !                   +7xsx_a    
                                !   !                 +-3 
  ----LT--------------          !   !             +---6 +7ywx_E    
                                !   !             !   ! 
  --LA------------RG--       +-14   +-------------7   +7unc_a    
                             !  !                 ! 
  ----------------RC--       !  !                 +----6qld_f    
                             !  !  
  --LT----------------     -15  !               +------4z5t_A    
                             !  +---------------8 
  ------RA--ET--RT----       !                  +------4ne1_p    
                             !  
  ------------------RA       +-------------------------7n8n_A    
                           

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updated Sat Sep 14 02:19:33 2024