Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE 1:1 ORC1 BAH DOMAIN IN COMPLEX WITH NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4jjn_ABCDEFGH 4kud_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7k7g_ABCDEFGHM 7z0o_CDE
redundant complexes4jjn_E 7k7g_A 4kud 7e9f 7z0o
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG------RT                   +------------------------8g57_E    
                               !  
  RG------RT                   !     +-----------------------8cww_A    
                               !     !  
  RA----LTRC                   !     !                +-------6jm9_A    
                               !     !      +---------3 
  --------RC                +-12     !      !         +-------6qld_f    
                            !  !  +-10   +--5 
  ------LT--                !  !  !  !   !  !           +-----7ywx_E    
                            !  !  !  !   !  +-----------2 
  --------RA                !  !  !  ! +-7              !   +-7xsx_a    
                            !  !  !  ! ! !              +---1 
  ----RG----                !  +-11  ! ! !                  +-7k6p_D    
                         +-13     !  +-8 ! 
  RT------RG             !  !     !    ! +--------------------7uv9_E    
                         !  !     !    ! 
  RGYA--LCRT             !  !     !    +---------------------8byq_e    
                         !  !     !  
  RG------RG          +-14  !     +-----------------------7yqk_E    
                      !  !  !  
  RA----LTRC          !  !  +---------------------------3kwq_E    
                      !  !  
  RG--------          !  !    +----------------------6a5l_e    
                      !  !    ! 
  RG----LC--       +-15  +----9            +---------8bvw_e    
                   !  !       !  +---------4 
  --------RT       !  !       +--6         +---------7lyb_G    
                   !  !          ! 
  RT----LARG     -16  !          +-------------------7unc_a    
                   !  !  
  RA--------       !  +-----------------------------6kxv_A    
                   !  
  --------RA       +-----------------------------1kx5_G    
                 

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updated Tue Dec 19 18:03:58 2023