structure namePAX5(1-149)+ETS-1(331-440)+DNA
(PAIRED BOX PROTEIN PAX5)
referenceWolberger et al. Mol.Cell 8 1267 2001
sourceHOMO SAPIENS
experimentX-ray (resolution=2.25, R-factor=0.231)
structural superfamilyHomeodomain-like;
sequence family'Paired box' domain;
multimeric complexes1k78_BI 1k78_EF 1mdm_AB
redundant complexes1mdm
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNRSHSKISSSSNR

Estimated binding specificities ?

readout + contactlogo
# IC=8.228 IC/col=0.514 n_of_columns=16 specificity:   
A |   0   8  83  24  22  24  24  24  24   0  24   1  24   5   0   0
C |  87  80   4  24   8  24  24  24  24  91  24   4  24   8  96   5
G |   1   4   5  24   8  24  24  24  24   4  24   0  24   8   0   0
T |   8   4   4  24  58  24  24  24  24   1  24  91  24  75   0  91
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RT--HGSGRGHG--RT----------RTSTKGRGTTLGNT   L   +-----------------------------1u78_A    
                                                 ! 
  NG----STHG--CTSTKG----ITSA--------------   L --3           +-----------------1pdn_C    
                                                 !     +-----1 
  --RT----STVTMCKGDCRGTA------------------   L   +-----2     +-----------------1iv6_A    
                                                       ! 
  --RA----RCET----SAQAKG------------------   L         +-----------------------5lxu_A    
                                               

home
updated Sun Aug 3 05:41:13 2025