interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO A CANONICAL DIRECT REPEAT WITH THREE BASE PAIR SPACER (DR3) RESPONSE ELEMENT
(Vitamin D3 Receptor)
referenceShaffer et al. 'EMBO 21 2242 2002
sourceHomo sapiens
experimentX-ray (resolution=2.80, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1kb2_AB 1kb4_AB 1kb6_AB 1ynw_AB
reference complex1kb2_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKRRK

Estimated binding specificities ?

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# IC=4.475 IC/col=0.895 n_of_columns=5 specificity:   
A |   0   0  13  13  96
C |   0   0  13  57   0
G |  96  96  16  13   0
T |   0   0  54  13   0
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updated Sat Aug 2 01:02:37 2025