interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VDR DNA-BINDING DOMAIN BOUND TO A CANONICAL DIRECT REPEAT WITH THREE BASE PAIR SPACER (DR3) RESPONSE ELEMENT
(Vitamin D3 Receptor)
referenceShaffer et al. 'EMBO 21 2242 2002
sourceHomo sapiens
experimentX-ray (resolution=2.80, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1kb2_AB 1kb4_AB 1kb6_AB 1ynw_AB
reference complex1kb2_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKRRK

Estimated binding specificities ?

contactlogo
# IC=4.516 IC/col=0.903 n_of_columns=5 specificity:   
A |   0  13  57   0   0
C |   0  13  13  96  96
G |   0  57  13   0   0
T |  96  13  13   0   0
scan!

home
updated Sun Jun 28 03:44:26 2026