3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Sep 9 12:49:25 2024

structure name	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
reference	Edayathumangalam et al. J.Mol.Biol. 326 371 2003
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.45, R-factor=?)
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex	5o9g_E 5o9g_F 5o9g_G 5x0y_D 5z3u_A 6ftx_B 6g0l_M 6iro_A 6nqa_A 6pww_K 6r25_E 6r8y_H 6upk_H 6x0n_f 6yov_C 7at8_D 7eg6_A 7egp_S 7jzv_N 7nkx_a 7nkx_f 7otq_E 7u0g_M 7unc_a 7und_e 7vdt_B 7xcr_F 7xzx_N 7xzz_N 7zs9_e 8a3y_a 8aag_A 8atf_Q 8bvw_e 8byq_e 8ceo_r 8cww_A 8g57_E 8he5_a 8jh2_e 8jhf_A 8siy_G 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1m18_A interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 1m18_B interface=22, dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1m18_C interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 1m18_D interface= trkesyaiyvykvlkqvhpdtgisskamSimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 1m18_E interface=4,29,47, kphRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 1m18_F interface=13,16,26, kvlrdniqgitkPaiRrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1m18_G interface= aktrssraglqfPvgRvhrllrkgnYaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 1m18_H interface= trkesyaiyvykVlkQvhpdtgissKamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak