1p3m_ABCDEFGH
citing 3d-footprint
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structure name
CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS
reference
Edayathumangalam et al. 'EMBO 23 260 2004
source
XENOPUS LAEVIS
experiment
X-ray (resolution=2.90, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
5o9g_E
5o9g_F
5o9g_G
5x0y_D
5z3u_A
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6upk_H
6x0n_f
6yov_C
7at8_D
7eg6_A
7egp_S
7jzv_N
7nkx_a
7nkx_f
7otq_E
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 1p3m_A interface=4,5,29,47, kphRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrviimpkdiqlarrirgera > 1p3m_B interface=21, niqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1p3m_C interface=29,64, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt > 1p3m_D interface= kesyaiyvykvlkqvhpdtgisskamsiMnsfvndvferiageasrlahynkrstitsreiqtAvrlllpgelakhavsegtkavtkytsak > 1p3m_E interface=3,4,29,47, kpHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrviimpkdiqlarrirgera > 1p3m_F interface=12,25, vlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1p3m_G interface= ktrssraglqfPvgrvhrllrkgnYaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 1p3m_H interface= esyaiyvykvlKqvhpdtgisskaMsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak
3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
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updated Mon Sep 9 13:43:27 2024