interface graph thumbnail
legend  pdf

structure nameBACTERIOPHAGE LAMBDA EXCISIONASE (XIS)-DNA COMPLEX
(EXCISIONASE)
referenceJohnson et al. J.Mol.Biol. 338 229 2004
sourceENTEROBACTERIA PHAGE LAMBDA
experimentX-ray (resolution=1.70, R-factor=0.193)
structural superfamilyPutative DNA-binding domain;
sequence familyExcisionaselike protein;
multimeric complexes1rh6_AB 2og0_AB 6p0u_ABEF
redundant complexes2ief_B 2og0_B 6p0u
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureETRRRR

Estimated binding specificities ?

readout + contactlogo
# IC=8.122 IC/col=0.738 n_of_columns=11 specificity:   
A |   9  52  76  14  24   9  24   0   0  96   0
C |  83   4   9  68  24  19  24  96   0   0  96
G |   0  36  11   0  24  54  24   0   0   0   0
T |   4   4   0  14  24  14  24   0  96   0   0
scan!

Dendrogram of similar interfaces ?

matrix format

home
updated Fri Sep 13 15:58:33 2024