interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF THE COOPERATIVE EXCISIONASE (XIS)-DNA COMPLEX REVEALS A MICRONUCLEOPROTEIN FILAMENT
(EXCISIONASE)
referencePapagiannis et al. Proc.Natl.Acad.Sci.Usa 104 2109 2007
sourceENTEROBACTERIA PHAGE LAMBDA
experimentX-ray (resolution=2.60, R-factor=0.201)
structural superfamilyPutative DNA-binding domain;
sequence familyExcisionaselike protein;
multimeric complexes1rh6_AB 2og0_AB 6p0u_ABEF
reference complex1rh6_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureETRRRR

Estimated binding specificities ?

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# IC=4.827 IC/col=0.439 n_of_columns=11 specificity:   
A |   4  24  24  24   0  24  96  24  15  84  19
C |   7  24  24  24   0  24   0  24  14   4   4
G |   4  24  24  24  96  24   0  24  19   4  11
T |  81  24  24  24   0  24   0  24  48   4  62
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updated Mon Dec 16 19:41:43 2024