3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameRNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1u35_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3an2_ABCDEFGH 3av1_ABCDEFGH 3av2_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azk_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3w96_ABCDEFGH 3w98_ABCDEFGH 3w99_ABCDEFGH 3wa9_ABCDEFGH 3waa_ABCDEFGH 3wtp_ABCDEFGH 3x1s_ABCDEFGH 3x1u_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 4z5t_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5ay8_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5b32_ABCDEFGH 5b33_ABCDEFGH 5b40_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gtc_ABCDEFGH 5gxq_ABCDEFGH 5jrg_ABCDEFGH 5x7x_ABCDEFGH 5xm0_ABCDEFGH 5xm1_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5z23_ABCDEFGH 5z30_ABCDEFGH 5zbx_ABCDEFGH 6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6inq_ABEbcdef 6inq_gh 6ir9_ABEWabcdef 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 6jou_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6k1i_ABCDEFGH 6k1j_ABCDEFGH 6k1k_ABCDEFGH 6kvd_ABCDEFGH 6kxv_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6t93_ABCDEFGH 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 7bxt_ABCDEFGHMN 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7d1z_ABCDEFGH 7d20_ABCDEFGH 7dbh_ABCDEFGH 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7vbm_ABCDEFGH 7vz4_ABCDEFGH 7w9v_ABCDEFGH 7wbw_Mg 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y7i_ABCDEFGH 8guk_ABCDEFGH 8he5_Eh 8jl9_ABCDEFGH 8jlb_ABCDEFGH 8jld_ABCDEFGH 8jnd_LNPQ 8jne_ABCDEFGH 8jne_KN 8jne_MQS 8kb5_ABCDEFGH 8ybj_ABCDEFGH 8ybk_ABCDEFGH 9fgq_ABCDEFGH
redundant complexes3ayw_D 3azg_D 3azi_H 3azl_H 3w96_D 3w98_H 3wa9_D 3wtp_D 4ym6_H 5avb_H 5b2j_H 5b32_D 5b33_H 5gxq_D 5y0d_H 6j4y_d 6k1j_D 6k1k_H 6kvd_D 6l49_D 6l4a_D 6t93_H 7w9v_H 7xtd_d 7xzz_N 8h0w_h 8jl9_H 8jnd_Q 8jnf_P 9fgq_H 1u35 3a6n 3afa 3an2 3av1 3av2 3aze 3azf 3azh 3azj 3azk 3azm 3azn 3w99 3waa 3x1s 3x1u 4ym5 4z5t 5av5 5av6 5av8 5av9 5avc 5ay8 5b0y 5b0z 5b1l 5b1m 5b24 5b2i 5b31 5b40 5cpi 5cpj 5cpk 5gse 5gtc 5jrg 5x7x 5xm0 5xm1 5y0c 5z23 5z30 5zbx 6a5o 6a5p 6a5r 6a5t 6a5u 6hkt 6inq 6ir9 6j4w 6j4x 6j4z 6j50 6j51 6jou 6jr0 6jr1 6k1i 6kxv 6r8y 6r8z 6r90 6r91 6r92 6r93 6r94 6usj 6v2k 7bxt 7c0m 7d1z 7d20 7dbh 7scy 7scz 7vbm 7vz4 7wbv 7wbw 7wbx 7xse 7xsx 7xsz 7xt7 7xzx 7xzy 7y00 7y7i 8gui 8guj 8guk 8h0v 8he5 8jlb 8jld 8jne 8kb5 8rbx 8xbt 8xbu 8ybj 8ybk
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  RG------           +-----------------------------7ccr_H    
                   +-7 
  ----RC--       +-8 +-----------------------------7yqk_C    
                 ! ! 
  ----RA--       ! +-----------------------------7e9c_F    
                 ! 
  ----RT--       !                             +8u14_G    
                 !              +--------------1 
  ----RG--     --9              !              +8upf_G    
                 !          +---4 
  ----RARA       !          !   !               +6a5l_g    
                 !          !   !             +-2 
  ----RG--       !        +-5   +-------------3 +8txv_G    
                 !        ! !                 ! 
  --HGRG--       !        ! !                 +8rbx_V    
                 +--------6 ! 
  ----RC--                ! +------------------7ux9_E    
                          ! 
  ----RT--                +--------------------6px1_A

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updated Sat Jan 10 09:38:41 2026