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legend  pdf

structure nameCRYSTAL STRUCTURE OF HPV6A E2 DNA BINDING DOMAIN BOUND TO A 16 BASE PAIR DNA TARGET
(Regulatory protein E2)
referenceBrady et al. 'Nucleic 34 3897 2006
sourceHuman papillomavirus type 6a
experimentX-ray (resolution=3.20, R-factor=0.259)
structural superfamilyViral DNA-binding domain;
sequence familyE2 early protein, C terminal;
multimeric complexes2ayb_AB 2ayg_AB
reference complex2ayg_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNKCYR

Estimated binding specificities ?

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# IC=4.915 IC/col=0.819 n_of_columns=6 specificity:   
A |   7   0   0   7   7   7
C |  73   0   0   7   7   9
G |   7  96  96   9   9  73
T |   9   0   0  73  73   7
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updated Sun Jun 28 05:23:34 2026