3c1c_ABCDEFGH
citing 3d-footprint
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structure name
THE EFFECT OF H3 K79 DIMETHYLATION AND H4 K20 TRIMETHYLATION ON NUCLEOSOME AND CHROMATIN STRUCTURE
reference
Chodaparambil et al. Nat.Struct.Mol.Biol. 15 1122 2008
source
XENOPUS LAEVIS / XENOPUS (SILURANA) TROPICALIS / XENOPUS (SILURANA) TROPICALIS / XENOPUS (SILURANA) TROPICALIS / XENOPUS (SILURANA) TROPICALIS
experiment
X-ray (resolution=3.15, R-factor=?)
structural superfamily
Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;
reference complex
5o9g_E
5o9g_F
5o9g_G
5x0y_D
5z3u_A
6ftx_B
6g0l_M
6iro_A
6nqa_A
6pww_K
6r25_E
6r8y_H
6upk_H
6x0n_f
6yov_C
7at8_D
7eg6_A
7egp_S
7jzv_N
7nkx_a
7nkx_f
7otq_E
7u0g_M
7unc_a
7und_e
7vdt_B
7xcr_F
7xzx_N
7xzz_N
7zs9_e
8a3y_a
8aag_A
8atf_Q
8bvw_e
8byq_e
8ceo_r
8cww_A
8g57_E
8he5_a
8jh2_e
8jhf_A
8siy_G
8xgc_4
links to other resources
NAKB
PDIdb
DNAproDB
protein sequence
> 3c1c_A interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdftdlrfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirgera > 3c1c_B interface= niQgitkpairrlarrggvkrisgliyEetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3c1c_C interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 3c1c_D interface= rkesyaiyvykvlkqvhpdtgisskamsImnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 3c1c_E interface=3,28,45, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdftdlRfqssavmalqeaseaylvalfedtnlaaihakrvtimpkdiqlarrirger > 3c1c_F interface=14,27, rkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 3c1c_G interface= trssraglqfpvgRvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 3c1c_H interface=2, tRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.
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updated Mon Sep 9 17:16:03 2024