interface graph thumbnail
legend  pdf

structure nameSGRAI WITH COGNATE DNA AND CALCIUM BOUND
(SgraIR restriction enzyme)
referenceDunten et al. 'Nucleic 36 5405 2008
sourceStreptomyces griseus
experimentX-ray (resolution=1.89, R-factor=0.221)
structural superfamilyRestriction endonuclease-like;
sequence familyCfr10I/Bse634I restriction endonuclease;
multimeric complexes3dpg_AB 3dvo_AB 3dvo_CD 3dw9_AB 3mq6_AB 3mq6_CD 3mq6_EF 3mq6_GH 3mqy_AB 3n78_AB 3n7b_AB 6obj_AB 7ss5_AB
reference complex6obj_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRQNKRSRSDR

Estimated binding specificities ?

readout + contactlogo
# IC=8.084 IC/col=1.011 n_of_columns=8 specificity:   
A |  10   0  96  10   0   0   0  12
C |  64  96   0  74  96   0   0  10
G |  12   0   0   0   0  96  96  10
T |  10   0   0  12   0   0   0  64
scan!

home
updated Mon Dec 18 07:49:01 2023