3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Wed Jun 24 17:39:37 2026

structure name	NUCLEOSOME CORE PARTICLE MODIFIED WITH A CISPLATIN 1,3-CIS- {PT(NH3)2}2+-D(GPTPG) INTRASTRAND CROSS-LINK
reference	Lippard et al. Chem.Biol. 17 1334 2010
source	XENOPUS LAEVIS
experiment	X-ray (resolution=3.22, R-factor=?)
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5o9g_F 5o9g_G 5x0y_D 5z3o_E 5z3u_A 6g0l_M 6iro_A 6r25_E 6r8y_H 6x0n_f 7at8_D 7nkx_f 7otq_E 7u0g_M 7vdt_B 7xzx_N 8cww_A 8g57_E 8siy_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3o62_A interface=3,4,5,12,28,46, phRYRpgtvalReirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 3o62_B interface= rdNIQgitkpaIrrlarrggvkrisglIyeetrgvlkvflenvirDavtytehakrktvtamdvvyalkrqgrtlygfgg > 3o62_C interface=29,64, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk > 3o62_D interface=3, ktRkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 3o62_E interface=3,4,5,46, phRYRpgtvalreirryqkstellirklpfqrlvreiaqdfktdlRfqssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera > 3o62_F interface=28, hrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfg > 3o62_G interface=29,64, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktRiiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 3o62_H interface=1,56, KtrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkRstitsreiqtavrlllpgelakhavsegtkavtkytsak