3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
(HISTONE H2B 1.1)
sourceXENOPUS LAEVIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1s32_ABCDEFGH 3kxb_ABCDEFGH 3lja_ABCDEFGH 3mvd_ABCDEFGHKL 3o62_ABCDEFGH 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 4r8p_ABCDEFGHL 5e5a_ABCDEFGH 5f99_ABCDEFGH 5hq2_ABGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5x0y_ABCDEFGHO 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6iro_ABCDEFGHL 6j99_ABCDEFGH 6jyl_ABCDEFGHK 6k1p_ABCDEFGHK 6nj9_ABCDEFGH 6nog_ABCDEFGH 6nqa_ABCDEFGH 6nzo_ABCDEFGHS 6o96_ABCDEFGH 6pa7_ABCDEFGHKP 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6px1_ABCDEFGH 6px3_ABCDEFGHS 6r1u_ABCDEFGHK 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6zhx_ABCDEFGH 7at8_ADEFGHIJK 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7e8i_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7otq_ABCDEFGHK 7swy_ABCDEFGH 7tn2_ABCDEFGHW 7unc_ABabcdefgh 7und_ABEZabdefgh 7xpx_ABCDEFGH 8cze_ABCDEFGH 8du4_ABCDEFGH 8etv_ABCDEF 8eue_ABCDEFHK 8euj_HMOabfhk 8g6g_ABCDEFGH 8g6h_ABCDEFGH 8g6q_ABCDEFGH 8g86_ABCDEFGH 8siy_CDEFGHIJ 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9f_ABCDEFGH 8t9h_ABCDEFGH 8thu_ABCDEFGH 8u5h_IJKMOQRS 9fh9_ABCDEFGH
redundant complexes1s32_D 3o62_D 5nl0_D 6esh_D 6j99_H 6k1p_D 6o96_D 6wz9_H 7cro_D 7nky_d 7oh9_D 7swy_D 7tn2_D 8cbn_H 8cze_H 8du4_H 8g6g_H 8g6h_H 8g86_D 8pc5_D 8t3t_H 8t3w_H 8t9f_H 8t9h_H 9fh9_H 3kxb 3lja 3mvd 3reh 3rei 3rej 3rek 3rel 3tu4 4r8p 5e5a 5f99 5hq2 5omx 5ong 5onw 5z3l 5z3o 5z3u 5z3v 6esf 6esg 6iro 6jyl 6nj9 6nog 6nqa 6nzo 6pa7 6pww 6pwx 6px1 6px3 6r1u 6ryr 6ryu 6s01 6vyp 6wz5 6x0n 6zhx 7at8 7crp 7crq 7crr 7e8i 7eg6 7egp 7enn 7nkx 7oha 7ohb 7ohc 7otq 7unc 7und 7xpx 7yi1 8aag 8b0a 8cbq 8cww 8etv 8eue 8euj 8f86 8g6q 8g6s 8g88 8g8b 8g8g 8hxz 8ihm 8pc6 8peo 8pep 8siy 8t3y 8thu 8tof 8u5h 8v4y 8v6v 8v7l
links to other resourcesNAKB PDBSum PDIdb DNAproDB

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updated Mon Jun 29 21:37:56 2026