3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF SNF2-NUCLEOSOME COMPLEX WITH SNF2 BOUND TO SHL2 OF THE NUCLEOSOME
(HISTONE H2B 1.1)
sourceXENOPUS LAEVIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1f66_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1s32_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 1zla_ABCDEFGH 2fj7_ABCDEFGH 2nzd_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3c1b_ABCDEFGH 3c1c_ABCDEFGH 3kuy_ABCDEFGH 3kxb_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lja_ABCDEFGH 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3mvd_ABCDEFGHKL 3o62_ABCDEFGH 3reh_ABCDEFGH 3rei_ABCDEFGH 3rej_ABCDEFGH 3rek_ABCDEFGH 3rel_ABCDEFGH 3tu4_ABCDEFGHKL 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4kgc_ABCDEFGH 4ld9_ABCDEFGH 4r8p_ABCDEFGHL 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5e5a_ABCDEFGH 5f99_ABCDEFGH 5hq2_ABGH 5nl0_ABCDEFGHZ 5nl0_KLMN 5omx_ABCDEFGH 5ong_ABCDEFGH 5onw_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5x0y_ABCDEFGHO 5xf6_ABCDEFGH 5z3l_ABCDEFGHO 5z3o_ABCDEFGHO 5z3u_ABCDEFGHO 5z3v_ABCDEFGHO 6esf_ABCDEFGH 6esg_ABCDEFGH 6esh_ABCDEFGH 6ftx_ABCDEFGHW 6g0l_ABCDEFGHMW 6iro_ABCDEFGHL 6jyl_ABCDEFGHK 6k1p_ABCDEFGHK 6nzo_ABCDEFGHS 6om3_ABCDEFGH 6om3_LMNOPQRST 6pa7_ABCDEFGHKP 6pww_AGHIJKLMN 6pwx_AGHIJKLMN 6px1_ABCDEFGH 6px3_ABCDEFGHS 6r1u_ABCDEFGHK 6r25_ABCDEFGHM 6ryr_ABCDEFGHW 6ryu_ABCDEFGHVW 6s01_ABCDEFGHK 6tem_ABCDEFGH 6vyp_ABCDEFGHKLMN 6vyp_abcdefghklmn 6wkr_CEIJKMOQRS 6wz5_ABCDEFGH 6wz9_ABCDEFGH 6x0n_ABCDEFGHO 6x0n_PR 6x0n_abcdefgh 6zhx_ABCDEFGH 7at8_ADEFGHIJK 7cro_BCDEFGHM 7crp_BCDEFGHM 7crq_BCDEFGHLM 7crr_BCDEFGHM 7e8i_ABCDEFGH 7eg6_ABCDEFGH 7egp_AOPQRSTUV 7enn_ACDEFGHKL 7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK 7m1x_ABCDEFGH 7nkx_ABEWabcdef 7nky_ABEOQabcdef 7nky_Zh 7oh9_ABCDEFGHKL 7oha_ABCDEFGHKL 7ohb_ABCDEFGHK 7ohc_ABCDEFGH 7otq_ABCDEFGHK 7unc_ABabcdefgh 7und_ABEZabdefgh 7vdt_ABCDEFGHK 7x3v_ABCDEFGH 7x3x_ABCDEFGH 7xfc_ABCDEFGH 7xfi_ABCDEFGH 7xfl_ABCDEFGH 7xfn_ABCDEFGH 7xnp_ABCDEFGH 7xpx_ABCDEFGH 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh 8cze_ABCDEFGH 8etv_ABCDEF 8eue_ABCDEFHK 8euj_HMOabfhk 8g6q_ABCDEFGH 8g86_ABCDEFGH 8siy_CDEFGHIJ 8t3t_ABCDEFGH 8t3w_ABCDEFGH 8t3y_ABCDEFGH 8t9f_ABCDEFGH 8t9h_ABCDEFGH 8thu_ABCDEFGH 8u5h_IJKMOQRS 9b3p_ABCDEFGH 9fh9_ABCDEFGH
redundant complexes1m18_D 1p3p_H 1s32_D 2nzd_D 3b6f_H 3b6g_D 3kuy_D 3mgr_D 3mnn_D 3o62_D 3ut9_H 4j8w_H 4j8x_D 4kgc_D 5cp6_H 5dnm_H 5dnn_D 5nl0_D 5z3o_D 6esh_D 6k1p_D 6tem_D 6wz9_H 7cro_D 7nky_d 7oh9_D 7x3t_R 7x3v_H 8cbn_H 8cze_H 8g86_D 8pc5_D 8t3t_H 8t3w_H 8t9f_H 8t9h_H 9b3p_H 9fh9_H 1f66 1kx3 1kx4 1kx5 1m19 1m1a 1p34 1p3a 1p3b 1p3f 1p3g 1p3i 1p3k 1p3l 1p3m 1p3o 1zbb 1zla 2fj7 3c1b 3c1c 3kxb 3lel 3lja 3lz0 3lz1 3mgp 3mgq 3mgs 3mvd 3reh 3rei 3rej 3rek 3rel 3tu4 3uta 3utb 4j8u 4j8v 4ld9 4r8p 4wu8 4wu9 4xuj 5e5a 5f99 5hq2 5omx 5ong 5onw 5oxv 5oy7 5x0x 5xf6 5z3l 5z3u 5z3v 6esf 6esg 6ftx 6g0l 6iro 6jyl 6nzo 6om3 6pa7 6pww 6pwx 6px1 6px3 6r1u 6r25 6ryr 6ryu 6s01 6vyp 6wkr 6wz5 6x0n 6zhx 7at8 7crp 7crq 7crr 7e8i 7eg6 7egp 7enn 7kbd 7kbe 7kbf 7m1x 7nkx 7oha 7ohb 7ohc 7otq 7unc 7und 7vdt 7x3w 7x3x 7xfc 7xfh 7xfi 7xfj 7xfl 7xfm 7xfn 7xnp 7xpx 7yi1 7zs9 7zsa 7zsb 8aag 8b0a 8bvw 8byq 8bz1 8cbq 8ceo 8cww 8etv 8eue 8euj 8f86 8g6q 8g6s 8g88 8g8b 8g8g 8gpn 8hxz 8ihm 8of4 8pc6 8peo 8pep 8siy 8svf 8t3y 8thu 8tof 8u5h 8v4y 8v6v 8v7l
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RA--       +-----------------------------6g0l_D    
                   !  
  RT--------       !                        +----9fgq_D    
                   !         +--------------4 
  ----RG----       !         !              +----5x0y_G    
                   !         ! 
  ----RA----     -11         !                    +1zla_C    
                   !   +-----9      +-------------3 
  ----RA--RA       !   !     !      !             +6a5l_g    
                   !   !     !    +-7 
  ----RG----       !   !     !    ! !              +8txv_G    
                   !   !     +----8 +--------------1 
  ----RG----       !   !          !                +8ox0_C    
                   +--10          ! 
  ----RG----           !          +--------------8jla_C    
                       !  
  ----RA----           !                         +7xsx_a    
                       !                  +------2 
  ----RT----           !           +------5      +8grq_A    
                       !           !      ! 
  ----RT----           +-----------6      +------8u14_G    
                                   ! 
  --LCRT----                       +-------------8hr1_E

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updated Sun Aug 3 10:25:39 2025