| structure name | CRYSTAL STRUCTURE ANALYSIS OF TRF2-DBD-DNA COMPLEX (Telomeric repeat-binding factor 2) |
| reference | Sliverman et al. 'To ? ? ? |
| source | Homo sapiens |
| experiment | X-ray (resolution=1.35, R-factor=0.174) |
| structural superfamily | Homeodomain-like; |
| sequence family | Myblike DNAbinding domain; |
| multimeric complexes | 1w0u_AB 3sjm_AB |
| redundant complexes | 1vfc |
| reference complex | 1vfc_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KVKDRTR |
Estimated binding specificities ?
| readout + contact |  |
A | 67 67 0 0 0 9 C | 9 0 96 96 96 9 G | 9 20 0 0 0 11 T | 11 9 0 0 0 67scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: HTRF2 | ||
| TTAGGG | PubMed | 3sjm_A(1.12e-03), 3sjm_AB(2.07e-04), 1vfc_A(4.63e-03) |
Dendrogram of similar interfaces ?
matrix formatRT----------------RCET------SAQAKT---- L +-6qec_A +--------------------3 --------DT--------------RGRCTTKT------ L ! +-2o9l_A +---9 RA--------------------------YAQTNAAARG L ! ! +-----------6wig_A ! +----------6 --------------------------RTVAITNAMCRG L +-12 +-----------1yrn_A ! ! RT----------------STVC----KGDCRG------ L ! ! +-1w0t_A ! +------------------------4 --------------------KG----RTEC-------- L ! +-1h89_C ! RA------------------------RCVTCTNAQTRC L +-13 +-----------1au7_A ! ! ! RT--------------------------ITQCNAACRG L ! ! +------5 +6a8r_A ! ! ! ! +-1 RT--------------------------IAQCNAYA-- L ! ! ! +----------2 +1nk2_P ! ! +----8 ! RT--------------------------NT--NAITRG L ! ! ! ! +5zjt_B +-14 +-10 ! --------------------------RCVACTNAQA-- L ! ! ! +------------------7xrc_C ! ! ! RT--------------------------IAKGNA---- L ! ! +-----------------------6m3d_C ! ! --LAHAKARA---------------------------- +-15 ! +-------------------------6dta_A ! ! +-11 ----------LT----NTHG--RT--YTPT-------- L ! ! ! +---------------6qil_A ! ! +---------7 ------------YA--KTPTPG----YTRG-------- L -16 ! +---------------4mtd_D ! ! ------------------RGKG----SGSAQAVC---- L ! +-----------------------------5no6_N ! --------------LC---------------------- L +-----------------------------6nsn_B |
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updated Thu Sep 12 18:14:42 2024