3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE TETRAHYMENA TELOMERASE PROCESSIVITY FACTOR TEB1 AB
(Tetrahymena Teb1 AB)
referenceHuang et al. Proc.Natl.Acad.Sci.USA 108 20357 2011
sourceTetrahymena thermophila
experimentX-ray (resolution=2.61, R-factor=0.223)
structural superfamilyNucleic acid-binding proteins;
sequence familyOBfold nucleic acid binding domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----------YTFT--------NT--SG--WG----KGFGEGKG--KG----EGTGYGEG--------NGHG                +-----------------3u58_C    
                                                                                   +------1 
  ------STDT----------QC--HC--FT--KTTGRCYCQC--LG--KGDG--------------------   L   +-2      +-----------------7cuh_A    
                                                                                 ! ! 
  ------------------------------------------------------------KTFTNTQT----   L --3 +------------------------6i52_B    
                                                                                 ! 
  RTTTKT--------TTATFT--NT------------------------------------------------   L   +--------------------------6bhx_B

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updated Wed Dec 18 00:03:02 2024