structure name | BURRH DNA-BINDING PROTEIN FROM BURKHOLDERIA RHIZOXINICA IN COMPLEX WITH ITS TARGET DNA (BURRH) |
reference | Campos-Olivas et al. 'Acta 70 2042 2014 |
source | BURKHOLDERIA RHIZOXINICA |
experiment | X-ray (resolution=2.65, R-factor=0.206) |
structural superfamily | Ankyrin repeat; |
sequence family | Xanthomonas avirulence protein, Avr/PthA; |
links to other resources | NAKB ![]() |
protein sequence | |
interface signature | YDCIINTNIINDIITRSDNSR |
Estimated binding specificities ?
readout![]() | ![]() |
A | 3 0 87 85 3 85 3 96 85 0 0 96 96 85 0 96 0 0 24 5 96 0 C | 3 0 3 3 3 3 3 0 3 0 96 0 0 3 0 0 96 0 24 3 0 0 G | 3 0 3 3 85 3 85 0 3 96 0 0 0 3 0 0 0 96 24 3 0 0 T | 87 96 3 5 5 5 5 0 5 0 0 0 0 5 96 0 0 0 24 85 0 96scan! |
Dendrogram of similar interfaces ?
matrix formatYTDTCT--IAIANGTGNGIAIANGDC--IAIATARGSADCNG----SART L +----4cja_A +----1 WTRA----NGDCIA--DC----DCDC--IC----IADC----IAICIA-- L ! +----3ugm_A --3 ------RT--RTDA--IA--ITIAIA--DCDC--ITIADCDCDC--DC-- L ! +--------2ypf_A +-2 --------------------RADCDCHTDC------IA--DC--DC---- L +--------4osh_B |
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updated Wed Dec 18 00:21:50 2024