4cja_A : 3D-footprint complex

structure name	BURRH DNA-BINDING PROTEIN FROM BURKHOLDERIA RHIZOXINICA IN COMPLEX WITH ITS TARGET DNA (BURRH)
reference	Campos-Olivas et al. 'Acta 70 2042 2014
source	BURKHOLDERIA RHIZOXINICA
experiment	X-ray (resolution=2.65, R-factor=0.206)
structural superfamily	Ankyrin repeat;
sequence family	Xanthomonas avirulence protein, Avr/PthA;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4cja_A interface=15,47,48,80,113,146,179,212,245,278,311,344,377,410,443,476,509,542,575,674,739, lnlsplerskiekqYggattlafisnkqqelaqilsradilkiasyDCaahalqavldcgpmlgkrgfsqsdivkiagnIggaqalqavldlesmlgkrgfsrddiakmagnIggaqtlqavldlesafrergfsqadivkiagnNggaqalysvldveptlgkrgfsradivkiagnTggaqalhtvldlepalgkrgfsridivkiaanNggaqalhavldlgptlrecgfsqatiakiagnIggaqalqmvldlgpalgkrgfsqatiakiagnIggaqalqtvldlepalcergfsqatiakmagnNggaqalqtvldlepalrkrdfrqadiikiagnDggaqalqaviehgptlrqhgfnladivkmagnIggaqalqavldlkpvldehgfsqpdivkmagnIggaqalqavlslgpalrergfsqpdivkiagnTggaqalqavldleltlvehgfsqpdivritgnRggaqalqavlaleltlrergfsqpdivkiagnSggaqalqavldleltfrergfsqadivkiagnDggtqalhavldlermlgdrgfsradivnvagnNggaqalkavleheatlnergfsradivkiagngggaqalkavleheatldergfsradivriagngggaqalkavlehgptlnergfnltdivemaanSggaqalkavlehgptlrqrglslidiveiasnggaqalkavlkygpvlmqagrsneeivhvaarRggagrirkmvapll
interface signature	YDCIINTNIINDIITRSDNSR

Estimated binding specificities ?

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# IC=24.380 IC/col=1.108 n_of_columns=22

specificity:

A |  96   0  87  24   0   0   0  96   3   0   3   0   0   3   0   0   3   3   3   0  96  84
C |   0   0   3  24  96   0   0   0   6   0   3   0  96   3   0  96   6  84   3   0   0   3
G |   0   0   3  24   0  96   0   0   3   0   3  96   0   6   0   0   3   3   6   0   0   6
T |   0  96   3  24   0   0  96   0  84  96  87   0   0  84  96   0  84   6  84  96   0   3

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Dendrogram of similar interfaces ?

matrix format

  
  YTDTCT--IAIANGTGNGIAIANGDC--IAIATARGSADCNG----SART   L        +----4cja_A    
                                                           +----1 
  WTRA----NGDCIA--DC----DCDC--IC----IADC----IAICIA--   L   !    +----3ugm_A    
                                                         --3 
  ------RT--RTDA--IA--ITIAIA--DCDC--ITIADCDCDC--DC--   L   ! +--------2ypf_A    
                                                           +-2 
  --------------------RADCDCHTDC------IA--DC--DC----   L     +--------4osh_B

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updated Fri Sep 13 18:07:00 2024