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legend  pdf

structure nameCRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH DNA DUPLEX
(DNA polymerase IV)
referenceYan et al. 'To ? ? ?
sourceSulfolobus solfataricus
experimentX-ray (resolution=2.50, R-factor=0.243)
structural superfamilyDNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain;
sequence familyimpB/mucB/samB family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ----VT------AT------PC----------------------LA------RT--RA                 +-----------------------------4ruc_A    
                                                                           +-2 
  ------FT------------PT----------ST----------LTIT----RG--RA               ! !                             +2agp_B    
                                                                         +-3 +-----------------------------1 
  ----VC------AC------------------------------LG--SC------RA             ! !                               +4fbt_A    
                                                                       +-4 ! 
  ----VTFT----AT------PC----------ST----------LA----RART--RG           ! ! +-----------------------------1jx4_A    
                                                                     +-5 ! 
  FCYC----------TTAT----SCICDCEC--ST--------------SG--RC--RT         ! ! +-----------------------------4tqr_A    
                                                                   +-6 ! 
  ----QT--WA------RTST--------------ST----TA--LT--RG--MTFT--       ! ! +-----------------------------3jaa_A    
                                                                 --7 ! 
  ----------ST--------WG--------------DTWC--MG--------------       ! +-----------------------------6x6z_A    
                                                                   ! 
  ------------------------------KT--------------------------       +-----------------------------7c97_K    
                                                                 

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updated Sun Aug 3 08:02:17 2025