| structure name | TERNARY COMPLEX OF Y-FAMILY DNA POLYMERASE DPO4 WITH (5'S)-8,5'-CYCLO- 2'-DEOXYGUANOSINE AND DTTP (DNA polymerase IV) |
| reference | Biochemistry 54 639 2015 X-RAY DIFFRACTION |
| source | Sulfolobus solfataricus |
| experiment | X-ray (resolution=1.58, R-factor=0.183) |
| structural superfamily | DNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain; |
| sequence family | impB/mucB/samB family; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatFCYC------------TTAT--------SCICDCEC--ST--------------SG--RCRT +-4tqr_A +-4 ----SA------EG--------FG------------------ETYG---------------- ! +-3gqc_A +-----5 ----VG------AGAG------PC--MG--------------IC------HA--ST--RGRG ! ! +4f4w_A ! ! +-1 --------------------------------------ST--YG----RG--LC----RCKT +--6 +-3 +4f4z_A ! ! ! ------------VASA----AAPTMT----------------EG----RT--FT-------- ! ! +-5yuy_A +--8 ! --------------SA----AA--------------------EG----------TG----RG ! ! +---------2oh2_B +-9 ! ------------MA----------------------------EC--------FTTG------ ! ! +------------7nv0_A ! ! ------QTWA----IT------------------------ST----TA--------RC---- +-------10 +---------------7m7n_A ! ! ----------ST----------WG------------------DT------------------ ! ! +------------6x6z_A +-11 +----7 --YG--------------------------------------EG------RA---------- ! ! +------------3osn_A ! ! ------------------------------------RT------------------------ -12 ! +3n4m_B ! +-------------------------2 ------------------------------------RA------------------------ ! +6b6h_I ! ------------------------------------RG------------------------ +---------------------------5tw1_T |
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updated Fri Sep 13 18:46:52 2024