3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEXED CRYSTAL STRUCTURE OF PASSB WITH SSDNA DT25 AT 1.91 ANGSTROM RESOLUTION
(Single-stranded DNA-binding protein)
referenceHuang et al. 'Rsc 9 40388 2019
sourcePseudomonas aeruginosa PAO1
experimentX-ray (resolution=1.91, R-factor=0.215)
structural superfamilyNucleic acid-binding proteins;
sequence familySinglestrand binding protein family;
multimeric complexes6irq_ABCD 6jdg_AB
redundant complexes6jdg_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  VC--NC----RC--VCNCTCACSC----TCECWCRC--FCKCECVCECYC--QCRC------NCVC--TC--QC--                            +-1eyg_D    
                                                                                           +--------------1 
  --KTNT------------TTAT------TT--WTRT----RT--IT--YTET--RTWTYTTT----NTNTMTQTLT   L   +-----3              +-6irq_A    
                                                                                     !     ! 
  ----NT--DT--------STATNT--QTTT--WT------------------------------------------   L --4     +----------------5odn_B    
                                                                                     ! 
  ----RTTTKT----------TTATTTFTAT--FTNT----------------------------------------   L   !        +-------------6bhx_B    
                                                                                     +--------2 
  ----------STDT------------------QCHCFAKT------------------------------------   L            +-------------1qzh_E

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updated Sun Aug 3 11:37:27 2025