4hca_A : 3D-footprint complex

structure name	DNA BINDING BY GATA TRANSCRIPTION FACTOR-COMPLEX 1 (Trans-acting T-cell-specific transcription factor GATA-3)
reference	Bates et al. 'Cell 2 1197 2012
source	Homo sapiens
experiment	X-ray (resolution=2.80, R-factor=0.247)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	GATA zinc finger;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4hca_A interface=14,15,17,27,31,57,58,60,70,74,77,78,95,97, mgrecvncgatstPLwRrdgtghylcNacgLyhkmngqnrplikptscancqttttTLwRrnangdpvcNacgLyyKLhninrpltmkkegiqtRnRkm
interface signature	PLRNLTLRNLKLRR

Estimated binding specificities ?

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# IC=7.701 IC/col=0.770 n_of_columns=10

specificity:

A |  19  56   4   6   3   0  78   0  88  74
C |  38  13   4  78   3   0   6   0   4   7
G |  20  13   4   6   3  96   6   0   2   8
T |  19  14  84   6  87   0   6  96   2   7

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updated Mon Dec 16 23:31:09 2024