3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Wed Jun 24 21:40:54 2026

structure name	NUCLEOSOME CORE PARTICLE CONTAINING (ETA6-P-CYMENE)-(1, 2- ETHYLENEDIAMINE)-RUTHENIUM
reference	Adhireksan et al. 'Nat 5 3462 2014
source	XENOPUS LAEVIS
experiment	X-ray (resolution=2.69, R-factor=?)
structural superfamily	Histone-fold;P-loop containing nucleoside triphosphate hydrolases;Chromo domain-like;Homeodomain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5o9g_E 5o9g_F 5o9g_G 6a5l_e 6g0l_M 6ir9_e 6m4g_G 6nqa_A 6pww_K 6r8y_H 6x0n_f 6yov_C 7eg6_A 7egp_S 7nkx_a 7nkx_f 7u0g_M 7unc_a 7und_e 7vdt_B 7xsx_a 7xzx_N 7zs9_e 8aag_A 8atf_Q 8bvw_e 8ceo_r 8he5_a 8jh2_e 8jhf_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4kgc_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger > 4kgc_B interface=25, vlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 4kgc_C interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 4kgc_D interface= ktrkesyaiyvykvlkqvhpdtgisskaMsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak > 4kgc_E interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirger > 4kgc_F interface=30, krhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 4kgc_G interface=29, aktrssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk > 4kgc_H interface= ktrkesyaiyvykvlkqvhpdtgisskaMsimnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsak