| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF ARABIDOPSIS THALIANA AUXIN RESPONSE FACTOR 1 (ARF1) IN COMPLEX WITH PROTOMOR-LIKE SEQUENCE ER7 (Auxin response factor 1) |
| reference | van den Berg et al. 'Cell(Cambridge,Mass.)' 156 577 2014 |
| source | Arabidopsis thaliana |
| experiment | X-ray (resolution=2.90, R-factor=0.216) |
| structural superfamily | DNA-binding pseudobarrel domain; |
| sequence family | Auxin response factor; B3 DNA binding domain; |
| multimeric complexes | 4ldx_AB 6ycq_AB |
| reference complex | 6ycq_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SHRPR |
Estimated binding specificities ?
| contact |  |
A | 9 0 0 7 24 9 7 0 0 C | 7 0 0 9 24 7 73 96 96 G | 7 0 96 7 24 7 9 0 0 T | 73 96 0 73 24 73 7 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ARF1 | ||
| TGTCTC | PubMed | 4ldx_A(3.91e-05), 4ldx_AB(6.42e-07) |
Dendrogram of similar interfaces ?
matrix format--STHG----------RG----PTRG---- L +--4ldx_A +---------------3 --STHG----ST----RC----PTRG---- L ! +--6sdg_B ! --STIT--RGVT--WC--NCNG----MA-- L +---5 +5yzz_C ! ! +--------------1 --ST----RG--WC--NC------MA---- L ! ! ! +6j9c_D ! +--4 --STIT--RGVTWC--NCNT----MA---- L --6 ! +6fas_B ! +--------------2 KASTLT--RGITWC--NT------MA---- L ! +6j9b_A ! --NARGHG--LC----YC--RGYGEC--RT L +----------------------5o63_B |
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updated Thu Sep 12 19:46:09 2024