interface graph thumbnail
legend  pdf

structure nameX-RAY STRUCTURE OF AAV-2 OBD BOUND TO AAVS1 SITE 3:1
(Protein Rep68)
referenceZarate-Perez et al. J.Biol.Chem. 290 27487 2015
sourceAdeno-associated virus 2 (isolate Srivastava/1982) / Adeno-associated virus 2 (isolate Srivastava/1982)
experimentX-ray (resolution=2.60, R-factor=0.206)
structural superfamilyOrigin of replication-binding domain, RBD-like;
sequence familyRep protein catalytic domain like;
multimeric complexes4zq9_ABC 5byg_AB 5byg_CD
reference complex5byg_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureMRRA

Estimated binding specificities ?

readout + contactlogo
# IC=4.007 IC/col=0.501 n_of_columns=8 specificity:   
A |   9  67  69  24  24  24   0   0
C |  11   9   9  24  24  24   0  96
G |  67   9   9  24  24  24  96   0
T |   9  11   9  24  24  24   0   0
scan!

home
updated Thu Sep 12 20:27:26 2024