5a72_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-CVUI IN COMPLEX WITH ITS TARGET (SRO1.3) IN THE PRESENCE OF 2 MM CA (DNA ENDONUCLEASE I-CVUI)
reference	LopezMendez et al. J.Biol.Chem. 290 28727 2015
source	CHLORELLA VULGARIS
experiment	X-ray (resolution=2.60, R-factor=0.169)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5a72_B interface=20,24,26,28,30,31,38,44,66,68,69,70,72,74,138, nfhdqlkfawlagfvdadgCinaQiVsReDYllkyqvRvsltvFqsttqhfilldiqkilgcgtvRkRNDgMsEfcvvggtslqttlekllpylnlkraqaklvlqiikklpntkdpsvlmeaalladkvglltdgkKrtilaenvreclkklghvvs
interface signature	CQVRDYRFRRNDMEK

Estimated binding specificities ?

readout + contact

# IC=12.780 IC/col=1.065 n_of_columns=12

specificity:

A |   0  96   0  22  96   0   0   0   0   7  14  59
C |  96   0   0   0   0  96   0   0  96   7   7  16
G |   0   0  96   0   0   0  96   8   0  82   9  14
T |   0   0   0  74   0   0   0  88   0   0  66   7

scan!

home
updated Tue Dec 17 00:46:49 2024