5cqq_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DROSOPHILA ZESTE DNA BINDING DOMAIN IN COMPLEX WITH DNA (Regulatory protein zeste)
reference	Gao et al. J.Mol.Biol. 427 3824 2015
source	Drosophila melanogaster
experiment	X-ray (resolution=3.10, R-factor=0.224)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5cqq_A interface=4,61,64,65,68,69, ltpRftaeekevlytlfhlheevidikhrkysvretwdkivkdfnshphvsamrnikqiqKfwLNsrLRkqypy
interface signature	RKLNLR

Estimated binding specificities ?

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# IC=2.846 IC/col=0.569 n_of_columns=5

specificity:

A |  38  12   0   6   9
C |  20  60   0  78   9
G |  19  12   0   6  69
T |  19  12  96   6   9

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: ZESTE
CGAGT	PubMed	5cqq_A(2.57e-08)
GAGTG	PubMed	5cqq_A(1.35e-04)

Dendrogram of similar interfaces ?

matrix format

  
  RA----------YAQTNAAARG   L         +-----------------------------6wig_A    
                                   +-1 
  ------RGKGSGSAQAVC----   L     +-2 +-----------------------------5no6_N    
                                 ! ! 
  --RC------------------       +-3 +-----------------------------6l9z_S    
                               ! ! 
  RT--------FTYAQTNAATRG   L --4 +-----------------------------6ryd_F    
                               ! 
  ----NT----------------       +-----------------------------7tve_F

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updated Fri Sep 13 19:25:16 2024