| structure name | STRUCTURE OF THE ARGONAUTE PROTEIN FROM METHANOCALDCOCCUS JANASCHII IN COMPLEX WITH GUIDE DNA (ARGONAUTE) |
| reference | Schneider et al. 'Nat 2 17035 2017 |
| source | METHANOCALDOCOCCUS JANNASCHII |
| experiment | X-ray (resolution=2.85, R-factor=0.232) |
| structural superfamily | Ribonuclease H-like;PAZ domain; |
| sequence family | Piwi domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatFG--KGETITHTYGEAET------------------NT---------------------------------------------------------- +--------------5g5t_A +-----3 ------------------KT----KTQT--IC--YC--------------LTYTYGHTNG----------NT----------------KA------ L ! ! +--------6qzk_A ! +-----1 ----------------------------------RTIT--------HCRG----NG------------RT--DGVGRG--FGRG----AGFG---- ! +--------4n41_B +------5 ----------------------------------------------FC------------------------------FALG------TC------ L ! ! +------------5ux0_A ! ! +----2 --WG----------------YA--WC------------------SAYA------------------RC--DCRALAKG--------SALAPA---- L +-6 +--4 +------------6d92_F ! ! ! ----------------------TT----ITLAYATA--RAITRT--FAYT--DTNT--------------------------------RA------ ! ! +-----------------6t5t_A +-7 ! --------------------------------------------------------------------------------------------QGKG ! ! +---------------------------2w36_A --8 ! ------------------------------------------------------------HCACICWT----------------YG---------- ! +-----------------------------5sww_C ! ------------------------------------------------------------------------------------YT---------- +-----------------------------5w2m_D |
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updated Fri Sep 13 19:37:15 2024