| structure name | STRUCTURE OF CLOSTRIDIUM BUTYRICUM ARGONAUTE BOUND TO A GUIDE DNA (5' DEOXYCYTIDINE) AND A 19-MER TARGET DNA (Clostridium butyricum Argonaute) |
| reference | Van der Oost et al. 'Nucleic 47 5809 2019 |
| source | Clostridium butyricum |
| experiment | X-ray (resolution=3.55, R-factor=0.250) |
| structural superfamily | Ribonuclease H-like; |
| sequence family | Piwi domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NHQTRKTYYNERNK |
Estimated binding specificities ?
| contact |  |
A | 96 24 24 96 11 24 9 24 14 24 96 9 4 0 0 C | 0 24 24 0 67 24 9 24 52 24 0 67 91 0 96 G | 0 24 24 0 9 24 9 24 14 24 0 11 0 0 0 T | 0 24 24 0 9 24 69 24 16 24 0 9 1 96 0scan! |
Dendrogram of similar interfaces ?
matrix formatNA--HTQAYT--KANA------QARA----TGRA--KT----KTQTKTYTIC----NCYC------TG--LTYTYGHTNGEG--RANT--------------------KA------ L +--------6qzk_A +------------1 ----------------LTPTYT----ITPT----LA------------------MT--RT--IT--------HCRG--NG--------SCDGVG--RGFGRG--RGFGAGFG---- ! +--------4n41_B ! --PC------WG--------------------KG----YAYARC------------------------SA--YA--------RC--DC--RA--KG--------SA--LAPA---- L +-----5 +--------------6d92_F ! ! +-2 --------------------------------TT----------------------------------KCFC------------------------------LG--YCTC------ L ! ! +-3 +--------------5ux0_A ! ! ! ! --------------------------------------------------------------NT---------------------------------------------------- --6 +--4 +----------------5g5t_A ! ! ----------------------------------------------------YA--TA--YA--RA------FAYTDTNT--------------------------FTRA------ ! +------------------6t5t_A ! ----------------------------------------------------------------------------------------------------------------QGKG +---------------------------2w36_A |
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updated Fri Sep 13 23:16:47 2024