interface graph thumbnail
legend  pdf

structure nameMOLECULAR INSIGHT INTO THE REGULATORY MECHANISM OF THE QUORUM-SENSING REPRESSOR RSAL IN PSEUDOMONAS AERUGINOSA
(Regulatory protein)
referenceZhang et al. 'To ? ? ?
sourcePseudomonas aeruginosa
experimentX-ray (resolution=2.40, R-factor=0.225)
structural superfamilylambda repressor-like DNA-binding domains;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQSCSRE

Estimated binding specificities ?

contactlogo
# IC=2.984 IC/col=0.597 n_of_columns=5 specificity:   
A |  17  86   8   2  72
C |  15   3  13   3   9
G |  16   4  12  89   7
T |  48   3  63   2   8
scan!

Dendrogram of similar interfaces ?

matrix format
  
  AT--QAAT--SA--                             +-------4z5h_A    
                                 +-----------1 
  --TTQA--LTSAET   L   +---------2           +-------2o4a_A    
                       !         ! 
  --SGQATG--CARG   L --3         +-------------------8g87_X    
                       ! 
  --SGQATT----RG   L   +-----------------------------1o4x_A

home
updated Fri Sep 13 19:56:08 2024